Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01892 and BPUM_1053

See Amino acid alignment / Visit BSNT_01892 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:25
# Commandline: needle
#    -asequence dna-align/BSNT_01892.1.24716.seq
#    -bsequence dna-align/BPUM_1053___yjaV.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01892-BPUM_1053___yjaV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01892-BPUM_1053___yjaV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01892
# 2: BPUM_1053___yjaV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 679
# Identity:     346/679 (51.0%)
# Similarity:   346/679 (51.0%)
# Gaps:         224/679 (33.0%)
# Score: 843.0
# 
#
#=======================================

BSNT_01892         1 ATGGAATCAACGCTGATTG----TAGGTGCGGACGAATTTTTCGGCCTTT     46
                     |||||..||    .|||||    ||||.||.||.||||||||.|||||..
BPUM_1053___y      1 ATGGAGACA----GGATTGATCATAGGGGCAGATGAATTTTTTGGCCTAG     46

BSNT_01892        47 CATTATGTGAACGAATGATGGATGAAGGCATACATGTTGACGT----TGT     92
                     |..|.||||||...||||||.|.||.|||||.||.||.||..|    |||
BPUM_1053___y     47 CGCTGTGTGAATATATGATGAAAGAGGGCATGCACGTGGATATCACATGT     96

BSNT_01892        93 TCTGGC----GGAAACAGAAGATAAAATGAGACAAATGTACTTAGAAGAA    138
                     .||  |    ..|||||.||||..|||      ||||||..|||||||||
BPUM_1053___y     97 CCT--CATCACCAAACAAAAGAGCAAA------AAATGTTATTAGAAGAA    138

BSNT_01892       139 AGACTCATGTGGCTTGGGAGAAATGAACTCTTTCG---------CCAGCT    179
                     .||.|.||||||||.||.||||||||.||.||.||         ||.||.
BPUM_1053___y    139 CGAATGATGTGGCTCGGCAGAAATGATCTTTTCCGTGTCATTGACCTGCA    188

BSNT_01892       180 TGAACACATTGG---AGACCAAAATTATGATACAATTTGTATCCAGTTCG    226
                     .||      |||   ||||   |..||||||...||.|.|||.|| .||.
BPUM_1053___y    189 GGA------TGGGAAAGAC---ACGTATGATCTGATCTTTATTCA-ATCA    228

BSNT_01892       227 GAAGTTTTTTGCCTTTAGACCAATGTGATTCTCCTTATATTTTAGTATAT    276
                     ||||             .||||    ||                 ||.|.
BPUM_1053___y    229 GAAG-------------AACCA----GA-----------------TAAAA    244

BSNT_01892       277 G--AAGAAGACCGAAAA-----GAATGGGAAAAAC----------GTGAA    309
                     |  |.||||.|...|||     |.||||.|.|.||          .||||
BPUM_1053___y    245 GGCAGGAAGGCTTGAAAGCGGCGCATGGCATATACCGTGTTCTTTATGAA    294

BSNT_01892       310 AAAAC---AGGCTCGGAAAAAACCGTGATCC----------TGCCGAAA-    345
                     |||||   ||       |.|||   |.||||          |||||..| 
BPUM_1053___y    295 AAAACTAAAG-------ATAAA---TCATCCAATCAGAATGTGCCGGTAG    334

BSNT_01892       346 --------------ATGTATGGGCCATGG---------AAAGAAGAAACA    372
                                   ||||.|||.||||||         ||||||..|||.
BPUM_1053___y    335 TTATTCTACCTCGCATGTTTGGACCATGGACAATTGATAAAGAAAGAACG    384

BSNT_01892       373 GAG---GAAGACGGCTATTACACAAACGACGTGGCTGACGA-GTTGC-TG    417
                     .||   |||||.|..|.||            |.|..||.|| ||||| .|
BPUM_1053___y    385 AAGCGTGAAGAAGCATTTT------------TTGTAGAAGATGTTGCAAG    422

BSNT_01892       418 AGATTCCTGTT------------------AGAACCAAGCCGTCATAGCAA    449
                     .||||  ||||                  .||||.|||     |.||.||
BPUM_1053___y    423 GGATT--TGTTCAACTGGGCATCAGGCGCTGAACAAAG-----ACAGGAA    465

BSNT_01892       450 AGATCAGCTTTTTGAATTGCA-------AGTCACAGAGA----AAACCTC    488
                     |.|.||    ..|||||||.|       ||.||.|.|||    ||||   
BPUM_1053___y    466 ATAACA----CATGAATTGAAGGTGGAGAGACAAACAGATGACAAAC---    508

BSNT_01892       489 AAAAGAAGAAGCAAAAACAAAAATTAT---CGAGTGGAAAAGACAATTTT    535
                       |||.|||||         ||||.||   .||.||||||||||||...|
BPUM_1053___y    509 --AAGCAGAAG---------AAATGATAGCAGAATGGAAAAGACAAAACT    547

BSNT_01892       536 CATCAATTTTCGACAAATATTAA------    558
                     ||.||.|||||||||||.|..||      
BPUM_1053___y    548 CAACATTTTTCGACAAAAAGCAAGAATGA    576


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