Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01900 and BPUM_1059
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:25
# Commandline: needle
# -asequence dna-align/BSNT_01900___yjaZ.1.24716.seq
# -bsequence dna-align/BPUM_1059___yjaZ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01900___yjaZ-BPUM_1059___yjaZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01900___yjaZ-BPUM_1059___yjaZ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01900___yjaZ
# 2: BPUM_1059___yjaZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 902
# Identity: 520/902 (57.6%)
# Similarity: 520/902 (57.6%)
# Gaps: 214/902 (23.7%)
# Score: 1319.0
#
#
#=======================================
BSNT_01900___ 1 ATGAGTGTAG--AACAAACATATAGCTGGCTCAGGAAGGCCGGTTCAA-- 46
|||.||.||| ||.|.||| |||.||...||| ||||
BPUM_1059___y 1 ATGGGTCTAGTCAATACACA-ATATCTCATTCA-----------TCAATC 38
BSNT_01900___ 47 TAGATGATTT--GGCGCACTACATT--ATCCCGCTTTTTTC--------- 83
|..||.|||| ||.|| || .||.||||||.|||
BPUM_1059___y 39 TTCATCATTTCAGGAGC------TTGCGTCGCGCTTTGTTCCTTATTTTA 82
BSNT_01900___ 84 -AGGTGCGGA-GAAAAAGAACTGGAAGGGC----ATTCTGGGACACCTTC 127
|||.||||| |||||||| |.||.| |||||....|||||.|
BPUM_1059___y 83 AAGGGGCGGAGGAAAAAGA-----ATGGTCCTCTATTCTCTCCCACCTGC 127
BSNT_01900___ 128 AGCATCATGGGATG--------TTTAAAAACAT-AAAAGAGGGTATTCA- 167
|||||||.||.||| |||.|||.||| .||||| ||
BPUM_1059___y 128 AGCATCACGGCATGATTCGGTCTTTTAAATCATGCAAAGA-------CAT 170
BSNT_01900___ 168 GACGGTTTC--CAAGCTGAAGGAAAAAGGTTTTTACGGACATATCCAAAA 215
|| || |.||||.||.|||||||| .|||...||..||...|.
BPUM_1059___y 171 GA-----TCAACCAGCTCAAAGAAAAAGG---GTACTTCCAGCTCGTTAT 212
BSNT_01900___ 216 GGAAGA--ACAGTAC-CT-CAAAAACAAATGGCAAGGTCCTGATGTACCA 261
|.|||| ||||..| || |||||.| |.|||.||||.|||||..|.|||
BPUM_1059___y 213 GAAAGAATACAGGGCGCTGCAAAAGC-AGTGGAAAGGCCCTGACATTCCA 261
BSNT_01900___ 262 ATTGTTACGCTGCCGGTTGATGAACGAAACAG--GAGAATCCGTTTAGAG 309
.||.|||...||||.||..|||| .|.||| ||||| .|||||
BPUM_1059___y 262 GTTTTTATTTTGCCAGTCAATGA---GAGCAGTAGAGAA----ATTAGA- 303
BSNT_01900___ 310 TTCGGATCAA----------AATCAGGACTCGCCTTTCAAGACAAAATGT 349
||.||| ||||.||..|.||.|||.|.|||||..|.|
BPUM_1059___y 304 ----GAGCAATTTTATTATCAATCCGGTATGGCATTTGACGACAAGGTCT 349
BSNT_01900___ 350 TCCTTTTTCTTTCGTCAGAT------TTAGATTTTGGGTCGGTATC--TG 391
|.||.|||.|.|||.||.|| ..||| ..|..|||||| | ||
BPUM_1059___y 350 TTCTGTTTTTGTCGCCAAATACCCCGAAAGA--ACGCATCGGTA-CATTG 396
BSNT_01900___ 392 CCCTTATGACGCATGAGTATCATCACGTTTGCCGGTTAGGTCATCTGACA 441
| ||||.|||||.|||||.||.||.|||.|||||..|..|||.||.
BPUM_1059___y 397 C-----TGACTCATGAATATCACCATGTATGCAGGTTACATTTTCTCACG 441
BSNT_01900___ 442 AAAGAGGAAAAGGATGTCACATTACTTGATACAATCATCATGGAAGGGCT 491
|||||.|||||.|||.|.|||||.||||||||||||||.|||||.||.||
BPUM_1059___y 442 AAAGAAGAAAAAGATTTTACATTCCTTGATACAATCATGATGGAGGGACT 491
BSNT_01900___ 492 GGCGGAATATGCTGTTTATGAGAGGTTCGGCCGAAGCCAAACGGCTGAGT 541
.||.|||||||||||.|||.|.||.|.|||...||||.|.||.||..|.|
BPUM_1059___y 492 CGCTGAATATGCTGTGTATCATAGATACGGAGAAAGCTATACAGCCAAAT 541
BSNT_01900___ 542 GGACGACTTGGTAT-ACACCGGA---GCAGCTTCAGGCTTTATATGAAAA 587
||||.|||...||| || || ||||||||||..|.|.|||.|.||
BPUM_1059___y 542 GGACCACTCTCTATGAC----GAATCGCAGCTTCAGCGTATGTATCAGAA 587
BSNT_01900___ 588 AAAGATTGCG---CC--CCATCGGGATATCAAA-----CGGGATAATCGA 627
| ||.| || .||||..| |||||| |.||| |||
BPUM_1059___y 588 A-----TGGGTATCCAGTCATCTTG--ATCAAAAAGTGCAGGA----CGA 626
BSNT_01900___ 628 TTATTTCCCCA---ACTG--------------TTATTCGGCAAAGGATAT 660
|.| |||| |||| ||.|||||..|.
BPUM_1059___y 627 --------CGAAAGACTGATACAGAACCTCCTTTAT--GGAAAAGGGAAC 666
BSNT_01900___ 661 CAGCCAAAAATGCTTGGATACGCAGTTGGATTCAATATTGTAAAAAAATA 710
.|.||.|||||||||||.|||||...||||||..||||.||.|||||.||
BPUM_1059___y 667 TACCCCAAAATGCTTGGTTACGCCACTGGATTTTATATCGTGAAAAAGTA 716
BSNT_01900___ 711 TTT-----AACCGCCAGCA--AGGCAAGCGCC-------GCAGACGGGCT 746
||| ||| .|||.| ||..|.|.|.| ||||| ||.
BPUM_1059___y 717 TTTCAATGAAC--ACAGAATCAGCGAGGAGTCTATGATTGCAGA---GCC 761
BSNT_01900___ 747 GTCCATTCCTGCTGAAACCTTTTTGGATGCAAT--GCT-------TTAA- 786
|||| |||||.|||||..|.||.|| .|| |.||
BPUM_1059___y 762 GTCC---------GAAACTTTTTTAAAGGCGATAGACTCACAAAGTGAAT 802
BSNT_01900___ 786 -- 786
BPUM_1059___y 803 GA 804
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