Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01911 and BPUM_1068
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:26
# Commandline: needle
# -asequence dna-align/BSNT_01911___trpS.1.24716.seq
# -bsequence dna-align/BPUM_1068___trpS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01911___trpS-BPUM_1068___trpS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01911___trpS-BPUM_1068___trpS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01911___trpS
# 2: BPUM_1068___trpS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1048
# Identity: 754/1048 (71.9%)
# Similarity: 754/1048 (71.9%)
# Gaps: 62/1048 ( 5.9%)
# Score: 2730.5
#
#
#=======================================
BSNT_01911___ 1 ATGAGCCTTTTTTATTATGTTTTAAGAAATGAGGTTGATGTTTTCATG-- 48
|||
BPUM_1068___t 1 ---------------------------------------------ATGAC 5
BSNT_01911___ 49 AAACAA-ACGATTTTTTCAGGCATTCAGCCAAGCGGCTCAGTGACGCTTG 97
|||.|| ||.||||||||||||||||||||.|||||.||.||.||..|.|
BPUM_1068___t 6 AAAGAAGACAATTTTTTCAGGCATTCAGCCGAGCGGTTCGGTCACATTGG 55
BSNT_01911___ 98 GCAACTATATCGGTGCAATGAAGCAGTTTGTCGAACTGCAGCATGATTAT 147
|.|||||||||||.||.||||||||.||||||||..||||.|||||||||
BPUM_1068___t 56 GGAACTATATCGGAGCGATGAAGCAATTTGTCGATTTGCAACATGATTAT 105
BSNT_01911___ 148 AACAGCTATTTTTGCATCGTGGACCAGCATGCGATAACTGTTCCTCAAGA 197
.||.|.||||||||..||||.||.||||||||.||.||.||...|||.||
BPUM_1068___t 106 CACGGATATTTTTGTGTCGTCGATCAGCATGCAATTACGGTGAGTCAGGA 155
BSNT_01911___ 198 CCGGCTTGAGCTTAGAAAGAATATCCGCAATC-TCGCGGCGCTTTACTTA 246
|.||||.|..|||.|..|.|||||..| ||.| |.||.||.|||||.||.
BPUM_1068___t 156 CAGGCTAGCTCTTCGCCAAAATATTAG-AAGCTTAGCAGCTCTTTATTTG 204
BSNT_01911___ 247 GCTGTCGGACTTGATCCAGAAAAAGCAACATTGTTTATTCAGTCAGAGGT 296
||.||.||||||||||||||.||.||.|||||||||||.||.||||||||
BPUM_1068___t 205 GCAGTTGGACTTGATCCAGAGAAGGCGACATTGTTTATCCAATCAGAGGT 254
BSNT_01911___ 297 CCCCGCGCATGCGCAGGCCGGATGGATGATGCAGTGTGTCGCTTATATCG 346
.||.||.||.||.|||||.|||||||||.|.||.|||||.||||||||.|
BPUM_1068___t 255 ACCTGCCCACGCCCAGGCAGGATGGATGCTTCAATGTGTTGCTTATATTG 304
BSNT_01911___ 347 GCGAGCTTGAGCGGATGACTCAATTTAAGGACAAATCCAAAGGCAATGAA 396
|.||..|.|||.|.|||||.||||||||||||||||||...||.||.|||
BPUM_1068___t 305 GGGAATTAGAGAGAATGACCCAATTTAAGGACAAATCCGCTGGTAAGGAA 354
BSNT_01911___ 397 GCTGTCGTCTCCGGCCTGTTAACATATCCGCCGCTGATGGCCGCTGATAT 446
||.||.||.||.||.||.|||||.|||||.||..|.|||||.|.||||||
BPUM_1068___t 355 GCGGTTGTTTCAGGACTATTAACGTATCCTCCATTAATGGCTGGTGATAT 404
BSNT_01911___ 447 TCTGCTGTACGGAACGGATCTTGTGCCTGTCGGCGAGGATCAAAAGCAGC 496
..|..|.||.||.||.|||.|.||.||||||||.||.|||||||||||||
BPUM_1068___t 405 CTTATTATATGGTACTGATTTAGTCCCTGTCGGAGAAGATCAAAAGCAGC 454
BSNT_01911___ 497 ACCTTGAGCTGACGCGGAATCTTGCAGAACGCTTCAACAAAAAATACAAC 546
|.|||||..|||||.|.|..|||||.|||||.||.|||...||||||||.
BPUM_1068___t 455 ATCTTGAATTGACGAGAACGCTTGCTGAACGTTTTAACCGCAAATACAAT 504
BSNT_01911___ 547 GACATCTTTACGATTCCGGAAGTGAAAATTCCAAAAGTCGGTGCACGCAT 596
|||||.||.||..|.||.||||||||.||||||||||..||.||.||.||
BPUM_1068___t 505 GACATTTTCACTGTACCTGAAGTGAAGATTCCAAAAGAAGGCGCTCGGAT 554
BSNT_01911___ 597 CATGTC-TCTGAATGATCCGCTGAAGAAAATGAGCAAATCTGATCCGAAT 645
.||||| |..|.| |||||...|||.||.|||||||||||.||||||||.
BPUM_1068___t 555 TATGTCGTTAGCA-GATCCAACGAAAAAGATGAGCAAATCCGATCCGAAC 603
BSNT_01911___ 646 CAGAAAGCTTATATTACATTGCTGGATGAGCCGAAGCAGCTTGAAAAGAA 695
||.|||.|.|..|||||.||..|.|||||.||.||.||||||||||||||
BPUM_1068___t 604 CAAAAATCCTTCATTACTTTATTAGATGAACCAAAACAGCTTGAAAAGAA 653
BSNT_01911___ 696 AATCAAAAGCGCTGTAACTGATTCTGAAGGCATTGTCAAATTTGATAAGG 745
|||||||||.|||||.||.|||||.||||||||.||.||.|..||.||.|
BPUM_1068___t 654 AATCAAAAGTGCTGTGACGGATTCAGAAGGCATCGTTAAGTACGACAAAG 703
BSNT_01911___ 746 AAAACAAACCGGGCGTTTCAAACCTTCTTACAATTTATTCAATTCTCGGC 795
|.|||||.||.||..||.|.|||.|.||.||.||||||||..|..|.|||
BPUM_1068___t 704 AGAACAAGCCCGGTATTGCGAACTTACTGACGATTTATTCTGTGTTAGGC 753
BSNT_01911___ 796 AATACGACAATTGAAGAGCTTGAAGC-AAAGTACGAAGGAAAAGGCTACG 844
||.|...|.||||.|||||||| ||| |||.||.|||||.|||||.||.|
BPUM_1068___t 754 AACATATCGATTGCAGAGCTTG-AGCAAAAATATGAAGGCAAAGGGTATG 802
BSNT_01911___ 845 GCGAGTTTAAAGGTGATTTGGCAGAA-GTCGTGGTGAACGCATTAAAACC 893
|.||.|||||.||.|||.|.|| ||| |||||.||..|.||.||||||||
BPUM_1068___t 803 GTGAATTTAAGGGAGATCTTGC-GAACGTCGTCGTTGATGCTTTAAAACC 851
BSNT_01911___ 894 GATCCAGGACCGCTATTACGAGCTGATAGAATCTGAGGAATTAGACCGGA 943
.||.||.||.||.||.||.||.||.||.||.||.||.||..|.|||||.|
BPUM_1068___t 852 AATTCAAGATCGATACTATGAACTCATTGAGTCAGATGAGCTTGACCGCA 901
BSNT_01911___ 944 TTCTTGATGAAGGCGCGGAACGGGCGAACCGGACAGCAAACAAAATGCTG 993
|||||||.|||||.||.|||...||.||.||..|||||||.|||||||||
BPUM_1068___t 902 TTCTTGACGAAGGTGCTGAAAAAGCAAATCGCGCAGCAAATAAAATGCTG 951
BSNT_01911___ 994 AAAAAAATGGAGAATGCCATGGGTCTTGGAAGAAAAAGACGCTAA--- 1038
|||||||||||||||||.||||||||.||.||||| ||||.||
BPUM_1068___t 952 AAAAAAATGGAGAATGCAATGGGTCTAGGTAGAAA---ACGCAAATAA 996
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