Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01914 and BPUM_1070
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:26
# Commandline: needle
# -asequence dna-align/BSNT_01914___oppA.1.24716.seq
# -bsequence dna-align/BPUM_1070.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01914___oppA-BPUM_1070.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01914___oppA-BPUM_1070.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01914___oppA
# 2: BPUM_1070
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2028
# Identity: 975/2028 (48.1%)
# Similarity: 975/2028 (48.1%)
# Gaps: 759/2028 (37.4%)
# Score: 1913.5
#
#
#=======================================
BSNT_01914___ 1 ATGAAAAAACGTTGGTC--GATTGTCACGTTGATGCT-----CATTTTCA 43
|||||||| ||| .|||.|||| |||| ..||||.|
BPUM_1070 1 ATGAAAAA------GTCTAAATTTTCAC-----TGCTTTTAGTTTTTTTA 39
BSNT_01914___ 44 CTCTCGTGCTGAGC-------------GCGTGCGGCTTTGGCGGCAGCGG 80
.|.||||||| | ||.|| || |||...
BPUM_1070 40 --TTGGTGCTGA-CTATTTTTGTATCTGCATG-----TT-----CAGGTA 76
BSNT_01914___ 81 ATCAAACGGTGAGGGGAAAAAGGACAGT------AAAG----GAAAGACG 120
|.|||| || ||.| |.||||.||.| |||| .|||.|.|
BPUM_1070 77 AACAAA--GT-AGCG--ACAAGGGCACTGCATCCAAAGATTCAAAACAAG 121
BSNT_01914___ 121 ACACTTAACATTAATATTAAAACTGAGCCGTTTTCCTTACATCCGGGATT 170
|..|| || |||.|||.|| |.||| ||.|.|
BPUM_1070 122 AGGCT--AC---AATTTTAGAA--------------TCACA---GGAAAT 149
BSNT_01914___ 171 G---GCAAATGATTCAGT---ATCAGGCG---------GTGTCATCCGTC 205
| ||||..|||.||.| |.||.||| ||.||| |
BPUM_1070 150 GCCTGCAATGGATACAATCCAAGCAAGCGATACAATTAGTTTCA-----C 194
BSNT_01914___ 206 AGAC------------TTTTGAAGGATTGACACGTATCAATGCAGATGGT 243
| || ||||||.||.|| |||||.||.|| |||.|
BPUM_1070 195 A-ACTATGAATAACGTTTTTGAGGGTTT-----GTATCGATTCA-ATGAT 237
BSNT_01914___ 244 GAGCCTGAAGAA---------GGCATGGCTTCTAAAATTGAAACGAGCAA 284
.| .|||||| ||.||||| |.||.| |||.|.|
BPUM_1070 238 AA---AGAAGAATTAGTACCTGGTATGGC-----AGATGG---CGAACCA 276
BSNT_01914___ 285 GGACGG-----AAAGACATATACA---TTTACCATT---CGTGATGGTGT 323
|.| | |||||.| |.||| |.||.|||| |...|.|.||.
BPUM_1070 277 GTA--GCTAACAAAGATA-AAACAGTTTATAACATTAAACTAAAAGATGC 323
BSNT_01914___ 324 GAAATGGTCTAATGGGGACCCTGTAACAGCACAAGATTTTGAATATGCTT 373
.||||||||||||||.||.||.||.|.|||.|||||.||.|..|||||||
BPUM_1070 324 CAAATGGTCTAATGGTGATCCAGTTAAAGCTCAAGACTTCGTTTATGCTT 373
BSNT_01914___ 374 GGAAATGGGCGCTTGATCCTAAT--AACG--------------------- 400
||.||.|.||..|.|||||..|| ||.|
BPUM_1070 374 GGCAACGTGCTTTAGATCCAGATCAAAAGTCTGAGTATGGCCCATATATG 423
BSNT_01914___ 401 -----------AATCGCAATACGCTTACCAGCTCTACTACATAAAAGGTG 439
|||| .||.|.|||.|..||.|.|||.|||.||||
BPUM_1070 424 ATGGTTGGTAAAATC-AAAAATGCTGATAAGGTTTACAACAAAAAA---- 468
BSNT_01914___ 440 CTGAAGCGGCGAATACCGGCAAAGGCAGCCTAGACGATGTGGCAGTAAAA 489
|||| ||||| ||.||..|.|.|.|.|||
BPUM_1070 469 ------------------GCAA----AGCCT-GATGAACTAGGAATTAAA 495
BSNT_01914___ 490 GCTGTGAATGACAAAACGCTGAAGGTTGAATT--AAAT----------AA 527
|||||.|..||.||| ||||| |||| ||
BPUM_1070 496 GCTGTAAGCGATAAA------------GAATTGCAAATCACACTTGAAAA 533
BSNT_01914___ 528 CCCGACTCCATATTTC--------AC-TGAATT---AACTGCGTTCTATA 565
.||.|.|||.||.||| || |..||| |||| ||||||
BPUM_1070 534 ACCAATTCCTTACTTCCAATCTCTACTTTCATTCCCAACT---TTCTAT- 579
BSNT_01914___ 566 CGTATATGCCGATCAATAAGAAAA-----TTGCAGA-------GAAAAAT 603
||..|.||| ||||| ||..||| ||.||||
BPUM_1070 580 --------CCAGTGAAT--GAAAAGTTCGTTAAAGAACAAGGTGATAAAT 619
BSNT_01914___ 604 A----AAAAGTGGAATACAAATGCCGGAGATGATTATGTATCAAACGGGC 649
| ||||.||.|| ||| |...|||||..||.||.|
BPUM_1070 620 ATGCGAAAACTGCAA------------AGA--ACCTTGTATACAATGGAC 655
BSNT_01914___ 650 CGTTCAAAATGA----------CGGCATGGAAACAC-AGC---------G 679
||| |||| .||.|||| |.||| ||| |
BPUM_1070 656 CGT-----ATGAACTTTCTTCTTGGGATGG-ACCACAAGCAACAACTTGG 699
BSNT_01914___ 680 GCTCTATTACTCTCGAAAAA-AATGACCAGTATTGGGATAAAGACAAAGT 728
| |.||| ||||| |||||..|.||||||||||||.|.||.||
BPUM_1070 700 G----AATAC-----AAAAAGAATGAAGAATATTGGGATAAAAAGAATGT 740
BSNT_01914___ 729 C---------AAACTGA-----AGAAAATCGATATGGTTATGATCAACAA 764
| |||||.| |.|..||| |.|.||||.||||
BPUM_1070 741 CTCTATGACAAAACTTACTTTTAAAGTATC-------TAAAGATCCACAA 783
BSNT_01914___ 765 TAACAATACGGAACTAAAAAAATTCCAAGCTGGCGAACTTGATTGGGCCG 814
.|.|.|.|.||...||||.|||||||.||| ||.|
BPUM_1070 784 -------GCAGCAGTTAACGCATTCGAAGCTGGAGAA---------GCTG 817
BSNT_01914___ 815 GTATGCCGCTCGGACAGCTTCCGACAGAATC----CCTGC---------- 850
.||| .||| ||.|.|..||| |||||
BPUM_1070 818 ATAT--------TACA----CCTAAATTATCAACTCCTGCAATCATCTCT 855
BSNT_01914___ 851 -----CGACCCTGA---------AAAAAGACGGTTCTTTACATGTTGAGC 886
|||...||| .|||||| |||| |.||.|
BPUM_1070 856 CAGTACGAAGGTGATAAGCGAATGAAAAGA-------TTAC---TAGAAC 895
BSNT_01914___ 887 CGATTGCAGGAGTGTATTGGTACAAATTCAA-CACTGAAGCTAAGCCATT 935
|.|.| ||||..||||..|||.|.|| ||..||| .|||..||||
BPUM_1070 896 CTACT------GTGTTCTGGTTGAAAATGAACCAAGGAA-ATAAATCATT 938
BSNT_01914___ 936 AGACAACGTCAATATCCGT-----AAAGCTTT--AACATATTCGC--TTG 976
|.|.||.|..|||.|.||| || || |||| || |||
BPUM_1070 939 AAAGAATGAAAATGTTCGTCGTGCAA----TTGCAACA-----GCAATTG 979
BSNT_01914___ 977 AC-------CGTCAGTCGATTGTTAAAAACGTTACGCAAGGAGAGCAAAT 1019
|| ||| ||||.|||.|.||...|||
BPUM_1070 980 ACAAAGAAGCGT-------TTGTAAAAGATGTATTGCA------------ 1010
BSNT_01914___ 1020 CCCGGCAATGGCTGCAG-TGCCGCCTACAATGAAGGGATT---------- 1058
.||||| |.||| |||.||.|||.||.|| |||
BPUM_1070 1011 -----GAATGG-TTCAGTTGCTGCATACTATCAA---ATTCCAAAAGACT 1051
BSNT_01914___ 1059 -------TGAGGATAAC----------------AAGGAAGG-----ATAC 1080
|||.||.||| |.||||.| ||||
BPUM_1070 1052 TTGTACATGATGAAAACGGAAAAGACTTCCGCGATGGAATGCCTAAATAC 1101
BSNT_01914___ 1081 TT-----CAAAGACAATGATGTCAAAACAGCAAAAGAATACCTT--GATA 1123
|| ||| ||||.|||| .||| .||||| ||.|| ||.|
BPUM_1070 1102 TTAGAAACAA--ACAAAGATG------AAGC-TAAGAA-ACTTTTCGAAA 1141
BSNT_01914___ 1124 AAGGCCTAAAAGAAATGGG-----CTTAAGCAAGGCATCTGATTTGCCAA 1168
||||.|||||||||.|.|| ||.|||.||.||.|
BPUM_1070 1142 AAGGTCTAAAAGAATTAGGAACGTCTAAAGTAACGCTT------------ 1179
BSNT_01914___ 1169 AAATCAAATTGTCTTACAACACTGATGA--CGCACAC-GCGAAAATCGCT 1215
|||| .|||| ..|||||| |..|.|| ||.||||
BPUM_1070 1180 ------AATT-ACTTA----GGTGATGATTCTGAGACTGCTAAAA----- 1213
BSNT_01914___ 1216 CAAGCAG----TACAAGAAATGTGGA--------AGAAAAATTTA---GG 1250
|||.|.| |.||..||| || ||||||.|||| ||
BPUM_1070 1214 CAATCGGAGCTTTCATTAAA----GATCAGCTTGAGAAAACTTTACCTGG 1259
BSNT_01914___ 1251 CGTTGATGTTGAGCTTGATAACTCAGAGTGGAATGT--------CTA--- 1289
|.|.|||.|| |..|.|||.|| ||| |||
BPUM_1070 1260 CTTAGATATT-------AATATTCAAAG-----TGTTCCTTTTGCTACTC 1297
BSNT_01914___ 1290 -TAT------TGATAAGCTTCACAGCCAAGATTA------TCAAATCGGC 1326
||| ||||||| |.|| |.||||| .||.|| |||
BPUM_1070 1298 GTATTGATCGTGATAAG----AAAG--AGGATTACGATCTACAGAT-GGC 1340
BSNT_01914___ 1327 CGTATGGGCTGGCTCGGCGACT-TCAATGATCCTATCAACTTCCTTGAAT 1375
.|.|||| |||.| .||.| || .|||.||.||||..|||..|||.|
BPUM_1070 1341 TGGATGG---GGCCC--AGATTATC-TTGACCCGATCACATTCTCTGACT 1384
BSNT_01914___ 1376 TGTTCCGTGACAAAAACGGAGGAAATAACGATACAGGCTGGGAAAATC-- 1423
|.|| |..||.|...||.||.||.|||.|.| |||||.|.||
BPUM_1070 1385 TATT---TATCACAGGTGGTGGGAACAACCACA-----TGGGATACTCTA 1426
BSNT_01914___ 1424 --CAGAA-------------TTCAAA-AAGCTTCTGAATCAGTCACAAAC 1457
.|||| ||.||| |.||.|||| .|.||| .|.|
BPUM_1070 1427 ATAAGAAATATGATCAACTCTTAAAAGATGCATCTG-GTAAGT---TAGC 1472
BSNT_01914___ 1458 TGAAACAGATAAAACAAAACATGCAGAGCTGCTGAAAA----------AA 1497
|| |.||||.||.|||.| ||||.||| ||
BPUM_1070 1473 TG------------CTAAACCTGAAGAAC-GCTGGAAAGCTTTACAAGAA 1509
BSNT_01914___ 1498 GC--AGAAGGTATT--TTCATTGATGAAATGCCGG--TTGCCCCAATCTA 1541
|| |.||.||||| |.|| .|||| |.||.|| ||.|.||||||||
BPUM_1070 1510 GCTGAAAAAGTATTACTACA-AGATG--ACGCAGGACTTTCACCAATCTA 1556
BSNT_01914___ 1542 TTTCCATA--------------CTGA-TACTTGGGTACAGGATGAAAACC 1576
| ||.| |||| || ||| |.||..
BPUM_1070 1557 T---CAGAGAGCAACTAATTATCTGATTA-----GTA-------ACAAAG 1591
BSNT_01914___ 1577 TAAAAGGTGTTATCATGC-CAGGTACTGGTGAGGTT------TATTTCAG 1619
|.|||||..||.||||.| || ||||| .|.|||||
BPUM_1070 1592 TTAAAGGATTTGTCATTCACA----------AGGTTGGACCAGAATTCAG 1631
BSNT_01914___ 1620 ----AAACGCAT---ATTTTAA--ATAA 1638
|||.|.|| |.||.|| ||||
BPUM_1070 1632 CTACAAATGGATGAAAATTGAAGGATAA 1659
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Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.