Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01929 and BPUM_1081
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:27
# Commandline: needle
# -asequence dna-align/BSNT_01929___yjbF.1.24716.seq
# -bsequence dna-align/BPUM_1081___yjbF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01929___yjbF-BPUM_1081___yjbF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01929___yjbF-BPUM_1081___yjbF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01929___yjbF
# 2: BPUM_1081___yjbF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1390
# Identity: 697/1390 (50.1%)
# Similarity: 697/1390 (50.1%)
# Gaps: 467/1390 (33.6%)
# Score: 1368.0
#
#
#=======================================
BSNT_01929___ 1 TTGTTTAGTGCTGTGACTGAAGACGGCCA--------AATG--------- 33
.||||.||.||.| ||||
BPUM_1081___y 1 ----------------ATGAATACAGCGATTATGGATAATGGAAAGCTTA 34
BSNT_01929___ 34 ------TTTCACCT------TCTAGGCGCTCAGCAAAACCAGAAATTAAA 71
||.|||.| |||| ||||||.| .|..|
BPUM_1081___y 35 TTCGTATTACACATCTTTTATCTA----------AAAACCGG---CTGGA 71
BSNT_01929___ 72 GC-------GGAGACG-----GTTCTTCTGTCCGGTATGCGGGGGAGAGC 109
|| ||.|||| |||.|.|||.||.|.||||.|||.|||
BPUM_1081___y 72 GCATGTCAGGGCGACGTGCAAGTTTTACTGCCCAGAATGCAGGGAAGA-- 119
BSNT_01929___ 110 TAGCTG----TGAAGCTCGGACTTCAAAAAGCGCCG-------CATTTTG 148
|| || |.|||||.|| |.||.|| || |||||||
BPUM_1081___y 120 -AG-TGCAATTAAAGCTTGG---TGAACAA----CGTGTCTATCATTTTG 160
BSNT_01929___ 149 CCCATAAACAGAACAAGTCCTGC---TCCA-TAGACAT----CGAACCGG 190
|.|||||||||..|| |||| |||| ||| |.| ||||.||
BPUM_1081___y 161 CACATAAACAGCTCA----CTGCATGTCCACTAG-CCTCAGGCGAAACG- 204
BSNT_01929___ 191 AAAGCGCCTACCACTTAGAAGGAAA--AAGACAGCTGTATGTAT------ 232
||.||.||...||..||||| |||.|| .||||.||
BPUM_1081___y 205 -----GCTTATCATCAAGCGGGAAAAGAAGCCA---TTATGAATTGGCTT 246
BSNT_01929___ 233 ----GGCT---GAAAACACAACGG-GCTTCACCAATATTGGAGCCGTATA 274
|||| |.|.|.|| ||| ||||.|..|.||| ||.|.
BPUM_1081___y 247 CAGCGGCTTGGGCATAAAC--CGGTGCTTGAAAAGTAT-------GTGTC 287
BSNT_01929___ 275 TAAGGACAATCAACCAAAGACCGGACGT---------CATGGCAAGAATC 315
.||||...|||||| |.||.||||| .||.|.|.||| |
BPUM_1081___y 288 AAAGGTTCATCAAC----GTCCTGACGTGGCCGTCTCTATTGGAGGAA-C 332
BSNT_01929___ 316 AAGGAGCATATGCT-TGCTGTTGAATATCAATGCGCCACTAT-------- 356
|| ||| |||..|.||||||||||||.|.|.|||
BPUM_1081___y 333 AA---------GCTATGCAATCGAATATCAATGCTCAAATATTTCACGGC 373
BSNT_01929___ 357 ---CGCTCCAGATGTCTTTCAAAAGCGGACAG-AGGGCTTCAAACAAGAA 402
.||||| || |||| |||||| |||.| ||...||||.|
BPUM_1081___y 374 AAGAGCTCC----GT-----AAAA--GGACAGCAGGAC-TCCGTCAAGCA 411
BSNT_01929___ 403 GGAATCA-TTCCGCA-GTGGATTATGGGATACAGC----CGCTTAAAACG 446
|| .|| ||||..| .|||||.||.|| ||| ||.|||||.||
BPUM_1081___y 412 GG--CCACTTCCCTATATGGATCATAGG----AGCAAATCGTTTAAAGCG 455
BSNT_01929___ 447 GA---CTGCTTCGTCCTTTTATCAGCTTTCAGCT--TTTCATTGG----- 486
.| ||||...|..||||| |.|||..|| .||||||||
BPUM_1081___y 456 AAAATCTGCCCAGCTCTTTT-----CCTTCTCCTCGATTCATTGGGGAAT 500
BSNT_01929___ 487 ---CAGTTTATCAATGCAAGTCCATACAGAGAG-CTGATATGTTATTGTC 532
.||...|||| ||.|.||.||| |||||.|.|||.||||
BPUM_1081___y 501 GTTGAGAGAATCA---------CAGAAAGGGAGTCTGATTTTTTACTGTC 541
BSNT_01929___ 533 -----CTGAAAGGCGTTCTTTTC-----TCCGGCTCAGCCACATCATTCC 572
|.||| ||..||| ||..||||| |||||
BPUM_1081___y 542 CGCTACAGAA------TCGATTCATCCATCTTGCTCA--------ATTCC 577
BSNT_01929___ 573 ----ATT-----CTACACAAACCATTCTTATTCCTCAGTCCAAACGATCC 613
||| |.|||.||| ||| ||.| |.
BPUM_1081___y 578 TTGTATTTCAACCAACAAAAA-------TAT------GTGC-------CG 607
BSNT_01929___ 614 CTATCCATCGGGCAGGT--------GCAGA-CGATCTTTTTTTCACTGA- 653
|||| |.|.|.|||.| |||.| || |...|||||| ||
BPUM_1081___y 608 CTAT--AACTGTCAGATCGCCAACAGCATATCG--CCAATTTTCA--GAT 651
BSNT_01929___ 654 -----ACCGAAACCCTCAATTCAA------------TATTCA--GGCTGG 684
|.||.|.||||||| .||| ||..|| ||||
BPUM_1081___y 652 ATCCTATCGCAGCCCTCAA-GCAAGCGCCAAGTCTCTACACAATGGCT-- 698
BSNT_01929___ 685 ACGAAAG--CGATTCACCGTTTTCGCCATAAACCCCATCG--GTTTAACT 730
||| ..||.||.|..|||.|.||...|||.|.||| .|||| |
BPUM_1081___y 699 ----AAGATGTATACAGCAATTTAGGCAGCGACCTCCTCGTATTTTA--T 742
BSNT_01929___ 731 CAAAGGAAATAAATCGCCTTAGGCTGC-TGTTTTATGAGAAGCGGCAGAC 779
||||.||||..||.|| .|||.|...| |.|||||||||.|.|..||.||
BPUM_1081___y 743 CAAATGAAAGCAAACG-ATTAAGAGACGTTTTTTATGAGCATCATCAAAC 791
BSNT_01929___ 780 ATCTTTTTCTTTTCTGCCGACTGAAGTGTTTGTTCCTGTTAGAAAAG-GG 828
|.||||..|||||.|||||.|||||.|.|||.|.||..|..|.|||| |.
BPUM_1081___y 792 AGCTTTCCCTTTTTTGCCGGCTGAATTATTTATCCCACTACGCAAAGCGT 841
BSNT_01929___ 829 GCAGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTGT---ATTT 875
.|| |.||||..||.||.||||.|||.||||||||||.|||.| |||.
BPUM_1081___y 842 ACA-TCTTTACAAGCCCTGTTTATGTCTGGCAGGGGTGTCTATACGATTG 890
BSNT_01929___ 876 GTTTATGACGGATCTTGGAGGTAAACGTGCGCCAATTCGTTTTTCAGCCG 925
|.|.|| |.|.||| || ||
BPUM_1081___y 891 GATGAT------------AAGAAAA--------AA----------AG--- 907
BSNT_01929___ 926 TTTTGCAGCAGTGCA----------AACTGCACATTCATAATAAGAACAT 965
|.||||||.|| ||||| ||.||.| ||||
BPUM_1081___y 908 ----GAAGCAGTCCAGTGACGATTCAACTG----TTGATGA-AAGA---- 944
BSNT_01929___ 966 TGCACTCA---GGT--------TTGAATGCAGCGAAG-------AGTG-- 995
|.||| ||| .||||.|.||..||| | ||
BPUM_1081___y 945 ---AATCAAGCGGTGTATCGAGATGAAAGGAGTAAAGCTTCGTTA-TGGC 990
BSNT_01929___ 996 --TCTTTC---AGAAGCGGTTAAACAG------------TATATTGAT-T 1027
|.|||| |||||...|.|||.|| |||.||.|| .
BPUM_1081___y 991 GATGTTTCAATAGAAGAAATAAAAGAGGTCATCACATCATATGTTCATGC 1040
BSNT_01929___ 1028 TTTTGTGCA-AGAAGGGATTTTTAAGGGAGACTCAGAAAGA-AGTA--TA 1073
..|||| || |.||||| |||||..|...||| |||||| .||| ||
BPUM_1081___y 1041 GCTTGT-CAGACAAGGG-TTTTTGCGCATGAC---GAAAGAGGGTAATTA 1085
BSNT_01929___ 1074 TGTGCTGAATCAGCCTGC--------AGGCG--GCATACACTCCATGCAG 1113
||||..|||.| | ||.|| .||.|||.|..|||.||
BPUM_1081___y 1086 -----TGAAGTAGCAT-CAAATCAAAAGCCGATACAAACAGTAGATGAAG 1129
BSNT_01929___ 1114 GATCTCATAGAAAGAGACCGCAGCTGTTTTATAGAATGA- 1152
..| ||| ||.|||| .|||.|.||||...||.|
BPUM_1081___y 1130 CGT-TCA---AACGAGA----TGCTTTCTTATTTCATTAG 1161
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