Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01933 and BPUM_1084
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:28
# Commandline: needle
# -asequence dna-align/BSNT_01933___yjbH.1.24716.seq
# -bsequence dna-align/BPUM_1084___yjbH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01933___yjbH-BPUM_1084___yjbH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01933___yjbH-BPUM_1084___yjbH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01933___yjbH
# 2: BPUM_1084___yjbH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 985
# Identity: 627/985 (63.7%)
# Similarity: 627/985 (63.7%)
# Gaps: 158/985 (16.0%)
# Score: 1860.5
#
#
#=======================================
BSNT_01933___ 1 TTGA----CAA-ACTATCAGCATGAGCTATACTTCGCCCATTGCCACGGT 45
|||| ||| || ||||||.|.|||.|||.|.||.||.|||||.
BPUM_1084___y 1 TTGAGCTGCAATAC-----GCATGATCAATATTTCTCACACTGTCACGGA 45
BSNT_01933___ 46 CATCCAAAAAAACCGCTTGAAATTTATATGTTTGTAGACCCTTTATGTCC 95
|||||..||||.|||.|||||||.|||.|.||..|.||||||.||.||||
BPUM_1084___y 46 CATCCTCAAAAGCCGATTGAAATCTATGTATTCATTGACCCTCTAAGTCC 95
BSNT_01933___ 96 TGAATGCTGGTCCTTAGAGCCCGTC-ATCAAAAAGCTGAAAATCAGATAC 144
.||.|||||||..|||||| ||.|| ||||||||..|.|||||.|..|||
BPUM_1084___y 96 AGACTGCTGGTTATTAGAG-CCATCTATCAAAAAATTAAAAATGAAGTAC 144
BSNT_01933___ 145 GGACGTTTTTTCACCTTACG--CATTATC--GCTTCCGCAAGCCTTACCG 190
||.|||||||||||.||||| ||.|..| ||| |.||..|||..|
BPUM_1084___y 145 GGCCGTTTTTTCACATTACGAACAGTGACAAGCT----CTAGTATTAATG 190
BSNT_01933___ 191 CTTTAAATAAAAAGCGAAAAAAGCATCTTCTCGCAGAAGCATGGGAAAAG 240
|.||.|||..|||.||||||||||||.|.||..|.||||||||||..||.
BPUM_1084___y 191 CATTGAATCGAAAACGAAAAAAGCATTTACTAACTGAAGCATGGGGGAAA 240
BSNT_01933___ 241 ATCGCGAGC----CGCTCTGGCATGTCATGTGACGGCAA----------- 275
.|.||||.| | ||| ||| |||
BPUM_1084___y 241 TTTGCGACCAAAAC-----------TCA---GAC--CAAAAAAGAACAAA 274
BSNT_01933___ 276 ---TGTCTGGTTCGAACA----GGATCAGCCGCTTTCATCGCCTTATATG 318
||||| ||||| |.|.| |||| ||||||.|.
BPUM_1084___y 275 TGCTGTCT-----GAACAAATTGTAAC-------TTCA---CCTTATCTC 309
BSNT_01933___ 319 GCTGCTCTCGCT----TTTAAAGCAGCCGAATTGCAAGGACGAAAAGCCG 364
|| |||||| ||.|||||.||.|||.|.|||||..|||||..||
BPUM_1084___y 310 GC----CTCGCTTGCATTAAAAGCGGCTGAACTTCAAGGCAGAAAATGCG 355
BSNT_01933___ 365 GCATGCAATTTCTCAGAAATATGCAGGAGAGCCTATTTGTTTCAA--AGA 412
|.|||.|||||||..|....||.|| |||..|..|||.||.|.| ||.
BPUM_1084___y 356 GAATGAAATTTCTGCGTCTCATTCA--AGAATCACTTTTTTGCCATCAGC 403
BSNT_01933___ 413 AAAATATTACGGATGAAAACGTGCTTTTGGAGATTGCTGAAAA------T 456
||.||.|.||...||||.||||.||..|.||.|.||| ||||| .
BPUM_1084___y 404 AAGATGTCACAAGTGAACACGTACTACTAGAAAATGC-GAAAAGCGCTGG 452
BSNT_01933___ 457 ACAAGTCTCGATCTTGAAGAATTCAAAAAAGATCTGCATTCTCAAAGCGC 506
||.||.| ||| ||.||||||.|....|||.|.|||||||||||.||
BPUM_1084___y 453 ACTAGAC---ATC--GAGGAATTCCAGCGCGATATTCATTCTCAAAGTGC 497
BSNT_01933___ 507 GGTCAAGGCGCTTCAATGTGACATGAAAATTGCTGCTGAGATGGATGTTT 556
.|||||.||..|..|||||||.|||||||||||.|||||.|||||.||.|
BPUM_1084___y 498 TGTCAAAGCATTAAAATGTGATATGAAAATTGCCGCTGAAATGGACGTGT 547
BSNT_01933___ 557 CTGTTAA--TCCGACACTGACGTTTTTTAATACGCAGCA---TGAGGATG 601
||| || .|||||..|..|.|||||||||| |||.| .|| ||||
BPUM_1084___y 548 CTG--AACTACCGACCTTTGCCTTTTTTAATA--CAGTAAACGGA-GATG 592
BSNT_01933___ 602 AAGGGCTTAAAGTTCCTGGCAGC-TACTCATATGATGTATATGAAGAAAT 650
||||..|.|||.||.|.|| .|| |||||.|||||||||||.||.|||||
BPUM_1084___y 593 AAGGATTAAAAATTTCAGG-TGCGTACTCTTATGATGTATACGAGGAAAT 641
BSNT_01933___ 651 TTTATTTGAGATGCTTGGCGACGAGCCGAAGCCGTCGGAAACACCGCCTT 700
..|.|||||.|||.||||.||..|.||.|..||.||.|||..|||.||..
BPUM_1084___y 642 CCTTTTTGAAATGATTGGTGAAAAACCAACCCCTTCAGAACGACCTCCAA 691
BSNT_01933___ 701 TAGAATGTTTTATTGAATATTTCCGCTTCGTTGCCT---CTAAAGAAATT 747
|.|||||.|||||||..||.||.|..| ||||.| |||||||||||
BPUM_1084___y 692 TTGAATGGTTTATTGCTTACTTTCAAT---TTGCATCTGCTAAAGAAATT 738
BSNT_01933___ 748 GCGCTTGTATATGATCTGAGCCTTGAAGAGGTAGAAAAAGAAATGAAAAA 797
|||.|.||.|||||.||||..||||||||.||.|||..||||||||||||
BPUM_1084___y 739 GCGGTCGTTTATGACCTGACACTTGAAGAAGTTGAACGAGAAATGAAAAA 788
BSNT_01933___ 798 ACTGGCGTTTGCTAAAAAGGTTGCCAAAGTG--GAAGCCAAACACGGAAT 845
.|||||.||.||||||||.|| |.||.||| .|||...|.||.|.|||
BPUM_1084___y 789 GCTGGCTTTCGCTAAAAAAGT--CGAACGTGTACAAGTGCATCAAGAAAT 836
BSNT_01933___ 846 GTTTTG----------GAAG-------TCTCTCAGCACTTATTCTGATGA 878
|||||| |||| ||..|||| ||..|||||
BPUM_1084___y 837 GTTTTGGCGCTATAAAGAAGATGATCATCATTCAG-----ATCTTGATG- 880
BSNT_01933___ 879 ATATCAATC-ATGTGA-----AAAATAG------- 900
||.||| .||||| ||.||.|
BPUM_1084___y 881 ---TCTATCGTTGTGAGAATGAACATGGGTGCTGA 912
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