Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01940 and BPUM_1088

See Amino acid alignment / Visit BSNT_01940 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:28
# Commandline: needle
#    -asequence dna-align/BSNT_01940___yjbL.1.24716.seq
#    -bsequence dna-align/BPUM_1088___yjbL.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01940___yjbL-BPUM_1088___yjbL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01940___yjbL-BPUM_1088___yjbL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01940___yjbL
# 2: BPUM_1088___yjbL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 413
# Identity:     254/413 (61.5%)
# Similarity:   254/413 (61.5%)
# Gaps:          88/413 (21.3%)
# Score: 679.0
# 
#
#=======================================

BSNT_01940___      1 ---ATGCAAAACAGAATCGAAAT-TTTGAATGCAACATTATCGGATGATC     46
                        |||||||||.||||.||||| ...||| |||||.|||...||.|| |
BPUM_1088___y      1 ATGATGCAAAACCGAATTGAAATCGCAGAA-GCAACTTTAAAAGAAGA-C     48

BSNT_01940___     47 AGCTTCGCCTTACTT----------GTCAGACAGAAGGAAA-CGAAGCGG     85
                     |     |.||.|.||          |||||| || ||.||| |.||    
BPUM_1088___y     49 A-----GGCTGATTTTGACGACCAAGTCAGA-AG-AGCAAATCCAA----     87

BSNT_01940___     86 AACGC--AAGCCGTCAGGTCAAATGCTTGTTGATTCTGACCACTTTGCTT    133
                     ||.||  ||| |.|||||.||||||||||||||||||||.||||||||.|
BPUM_1088___y     88 AAAGCAAAAG-CATCAGGACAAATGCTTGTTGATTCTGATCACTTTGCGT    136

BSNT_01940___    134 TTGTATACATACTTG--AATTAGCTGATTCTTTTGAATATGTCATTATAA    181
                     |.||.||||||||||  |||.||  ||.||.|||..||||.|.||..||.
BPUM_1088___y    137 TCGTTTACATACTTGAAAATGAG--GAGTCCTTTTCATATCTTATCTTAG    184

BSNT_01940___    182 AGGAACATGTATGG----CCGGAACTGAAGCAGGCCCATG-CACAAAAAA    226
                     .||||.||..||||    |...||..||||||     ||| |||...|.|
BPUM_1088___y    185 GGGAAGATACATGGGCTCCATTAAAAGAAGCA-----ATGACACTTGACA    229

BSNT_01940___    227 TACCGGT-TGTTTTAGAGGCA--GGA--GACCAAACAATT-----GAACT    266
                     |.||.|| |.|||    ||||  |||  |||      |||     |||||
BPUM_1088___y    230 TCCCTGTCTATTT----GGCAGCGGAAGGAC------ATTCGTTAGAACT    269

BSNT_01940___    267 GGCAGGC--CTGCATGAGGAGCTGGAATATCTTTTAGAAAATATAAAAGA    314
                       ||..|  ||.|||.|.||..|..|.|||.|..|.||.|||||.|||||
BPUM_1088___y    270 --CATTCAGCTTCATCAAGAATTACATTATTTAATCGACAATATTAAAGA    317

BSNT_01940___    315 TAATGCAAACTATGGAGAAGAAATGGAAGAAAAAGTGAA----ACACGTG    360
                     .|||||.||.||.||   |||.||||||||.||||||||    |||    
BPUM_1088___y    318 CAATGCCAATTACGG---AGATATGGAAGAGAAAGTGAAGAGCACA----    360

BSNT_01940___    361 TTT----TTATAG    369
                      ||    |.|   
BPUM_1088___y    361 -TTCCTCTGA---    369


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