Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01943 and BPUM_1091

See Amino acid alignment / Visit BSNT_01943 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:28
# Commandline: needle
#    -asequence dna-align/BSNT_01943___yjbO.1.24716.seq
#    -bsequence dna-align/BPUM_1091___rluA2.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01943___yjbO-BPUM_1091___rluA2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01943___yjbO-BPUM_1091___rluA2.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01943___yjbO
# 2: BPUM_1091___rluA2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 994
# Identity:     603/994 (60.7%)
# Similarity:   603/994 (60.7%)
# Gaps:         221/994 (22.2%)
# Score: 1704.0
# 
#
#=======================================

BSNT_01943___      1 GTGGAGCATTTTTTTAT--CAG--AAAGAACATTACTTCCGCTGAGGACG     46
                                    ||  |||  ||||||                ||.|
BPUM_1091___r      1 ---------------ATGACAGCCAAAGAA----------------GAGG     19

BSNT_01943___     47 GGATGACTGTAAAAGAATATGCCGGT-----GAACTGGGAATTTCGAAAC     91
                     ||.||..|.||||.||.|||     |     ||.||.||.|||||||||.
BPUM_1091___r     20 GGCTGCTTTTAAAGGATTAT-----TTAATAGATCTTGGCATTTCGAAAA     64

BSNT_01943___     92 GTCTGCTGACCGATATTAAGTTTGGCGGGGGAGACCTGCAGATTAACGGT    141
                     |..|||||||.||||||||.||||..||.||.||.||.|..|||||.||.
BPUM_1091___r     65 GAATGCTGACAGATATTAAATTTGATGGCGGTGATCTCCTCATTAATGGA    114

BSNT_01943___    142 GAGCATGTGACGGTCAAATACGTTTTGAAAG-------AGGGAGA-----    179
                     |||||||||||.||.|.||||       |||       |.|||||     
BPUM_1091___r    115 GAGCATGTGACTGTGAGATAC-------AAGCTGCATAATGGAGACAGGC    157

BSNT_01943___    180 ----TCTTCTTATCGTGAAGTTTCCTGAGGAACAGGTGAGCGAGACGCTG    225
                         |.|| |||        ||.||..|||||.|.|||||.||...||| 
BPUM_1091___r    158 TCACTATT-TTA--------TTCCCAAAGGAAAAAGTGAGTGAAGGGCT-    197

BSNT_01943___    226 CTGGCAGAGCCT------ATTCCGCTCGATATCCTTTAT--GAGGATGAA    267
                          |.|||||      ||||||||.|||||  |||||  ||||||||.
BPUM_1091___r    198 -----AAAGCCTGCTCCGATTCCGCTTGATAT--TTTATTCGAGGATGAG    240

BSNT_01943___    268 CATGTGCTTGT----GATAAACAAGCAGCCGTATGTGTCATCAATCCCTT    313
                     |||||.|||||    .||||  |||  |||.|||.|..|.||.||.||||
BPUM_1091___r    241 CATGTCCTTGTACTGAATAA--AAG--GCCATATATCCCGTCCATTCCTT    286

BSNT_01943___    314 CGAGAGAGCACCC----CTCCGGCAGCATTGCCAATGGAATTATTG-ATC    358
                     |..|.||||||||    |    .|||.|||||.||||| .||.||| |.|
BPUM_1091___r    287 CCCGTGAGCACCCAGAGC----ACAGTATTGCAAATGG-GTTGTTGCACC    331

BSNT_01943___    359 ATTAT-CAAAAAAACGGAGTGAG---GGC-GACAGTACATCTTGTCACCC    403
                     ||||| ||.|     |.|||..|   ||| ||||||.|||.|.||.|..|
BPUM_1091___r    332 ATTATGCAGA-----GCAGTCTGTTCGGCTGACAGTTCATTTGGTGAATC    376

BSNT_01943___    404 GGCTAGACCGGGATACATCAGGTGTCATGCTTGTTGCCAAGCATCGATTT    453
                     |.||.|||||.||||||||.||.|||||||||||.|||||||||||.|||
BPUM_1091___r    377 GTCTTGACCGTGATACATCTGGCGTCATGCTTGTGGCCAAGCATCGCTTT    426

BSNT_01943___    454 GCCCACTCCATTTTATCGTCTGCGCAAAAAAACGGCCTTGTGAAACGCCG    503
                     ||||||..|.|||||||....|||||.||||..||....||.|||||...
BPUM_1091___r    427 GCCCACAGCCTTTTATCAAAAGCGCAGAAAAGTGGAGCGGTTAAACGAAC    476

BSNT_01943___    504 GTATGCGGCAGTG-GTT--CACGGGCGGATGGCA----CAGATGGA----    542
                     .||     |||.| |||  |||      ||||||    ||.|  ||    
BPUM_1091___r    477 ATA-----CAGAGCGTTTACAC------ATGGCATGATCAAA--GAAAAG    513

BSNT_01943___    543 ---GGGAACAGTCGATGCTCCGATTGGCAGACATCCTGACAGTATTATT-    588
                        ||.|.||.|||| ||....||||.|.||.|....||.|||||.||| 
BPUM_1091___r    514 CATGGCACCATTCGA-GCAAAAATTGCCCGAAAAGGAGATAGTATCATTG    562

BSNT_01943___    589 ---GAACGGACGGTAACACCGGACGGCCAGAAGGCTGTTACTCATTTT--    633
                        |||.||.||.|.|.||.|||    |||.|.|||||.||.||||||  
BPUM_1091___r    563 AGCGAATGGTCGATGATACTGGA----CAGGAAGCTGTGACGCATTTTAC    608

BSNT_01943___    634 --TACG-TCACATGTGCA-AATGA--TG-ACATGACCTC-GGTG----GC    671
                       |||| .||   |||.| |.|||  || |||||   || |.||    ||
BPUM_1091___r    609 AGTACGAGCA---GTGGACACTGAGTTGAACATG---TCAGATGTAGCGC    652

BSNT_01943___    672 ATTGCAGCTTGAGACTGGACGAACCCATCAAATTCGTGTTCATATG-AGC    720
                      |.||| |||||.||.||..||||||||||||||||||||||.||| || 
BPUM_1091___r    653 -TAGCA-CTTGAAACGGGGAGAACCCATCAAATTCGTGTTCACATGCAG-    699

BSNT_01943___    721 TATCTCGGGCACCCGTTGTGCGGCGATACACTGTACGGCGGAACGA--GA    768
                     |||||.||..|||||.|...|||.|||||..|.||.||||||||||  ||
BPUM_1091___r    700 TATCTTGGTTACCCGCTCATCGGAGATACGTTATATGGCGGAACGAATGA    749

BSNT_01943___    769 CAGGA--AATTGGCCGGCAGGCTCTGCACAGCGAGCATCTT-TCATTTAT    815
                     ..|||  ||    |||||||||.|||||.||.|||..|||| || |||..
BPUM_1091___r    750 GCGGATGAA----CCGGCAGGCACTGCATAGTGAGACTCTTGTC-TTTCC    794

BSNT_01943___    816 CCATCCGCTGACACAGAAGAACATGACGTT-TCATGCTCCACTGCCTCAG    864
                     .||||||.||||...|.||.|.|||||.|| || .|||||.||.|||.|.
BPUM_1091___r    795 TCATCCGATGACTGGGGAGGAAATGACATTCTC-GGCTCCGCTTCCTGAA    843

BSNT_01943___    865 GACATGAGAAAACTGATAAAAGGAGAGAATCATTGA--------    900
                     |||||||                    ||||||||.        
BPUM_1091___r    844 GACATGA--------------------AATCATTGCTGCTTTAA    867


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