Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01975 and BPUM_1114
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:30
# Commandline: needle
# -asequence dna-align/BSNT_01975___yjcD.1.24716.seq
# -bsequence dna-align/BPUM_1114___yjcD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01975___yjcD-BPUM_1114___yjcD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01975___yjcD-BPUM_1114___yjcD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01975___yjcD
# 2: BPUM_1114___yjcD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2519
# Identity: 1554/2519 (61.7%)
# Similarity: 1554/2519 (61.7%)
# Gaps: 445/2519 (17.7%)
# Score: 4223.0
#
#
#=======================================
BSNT_01975___ 1 TTGAAATGCGCCCGACTGA-ATGATAGAA-----TCATACATTTACATAC 44
|||||||||||.|||| || |||||.||| ||| ||||||||
BPUM_1114___y 1 TTGAAATGCGCACGAC-GACATGATCGAACGATCTCA-----TTACATAC 44
BSNT_01975___ 45 ATATTCGAGAGAACATTATCAATTCCTCTTTGAAGAGGGAATAAAAGGAC 94
.|||||||||||||||||||||||||||..|||.|||||||.||||||.|
BPUM_1114___y 45 GTATTCGAGAGAACATTATCAATTCCTCCATGACGAGGGAAAAAAAGGGC 94
BSNT_01975___ 95 ATTTATTTTGTTCTCATTGCGGAAAGCCCGTTTTGTTACGGCTTA----- 139
|.|||||.||..|..||||||||.|.|||||.|| ||.|.|.|||
BPUM_1114___y 95 ACTTATTCTGCCCATATTGCGGACAACCCGTCTT-TTTCAGGTTAAATAT 143
BSNT_01975___ 140 ACATCGCCGATCC-GCCAGAGTTTATCCA----------TCGCCAGCCAG 178
|||| |..||.|| ||| |||||.|| || .||| ||.
BPUM_1114___y 144 ACAT-GAAGAACCTGCC----TTTATTCATAAACATATGTC-TCAG-CAA 186
BSNT_01975___ 179 GCGATTTTCCGGCATGTGAGGAGGCGTGCGAACCGAAGCCCTCTAAAG-- 226
|.||| ||||||..|.||....|||| ||| |||
BPUM_1114___y 187 GAGAT--------ATGTGAACAAGCAGAAGAAC--AAG-------AAGTT 219
BSNT_01975___ 227 -AGGAAAAAAAAGAAGACGATCAGGAA------TC------------TGG 257
||.|||||.|.|.|||..|..||||| || |||
BPUM_1114___y 220 CAGAAAAAACACGCAGAACAAAAGGAAAGTGCTTCTTATAAAGAACGTGG 269
BSNT_01975___ 258 TGTCATTCGTTTACCCA-AGGGA---AAAGCGATCGCCGCTGACCCGTCC 303
.|.|.|.|||||.||.| |||.| |||.| ||| ||.
BPUM_1114___y 270 GGGCTTCCGTTTTCCAACAGGCAAACAAATC-ATC------------TCG 306
BSNT_01975___ 304 CCAGC---TGTTAC---GGAATGGC----ACC---GTC--------CTA- 331
|.|.| ||.|.| .||.|||| ||| ||| .||
BPUM_1114___y 307 CAAACGAATGATTCATATGAGTGGCTGGAACCAAGGTCGATTCAATTTAG 356
BSNT_01975___ 332 -GAAGCATTAAACCAGGAACACCATTTGTGCCA-AAAACAATAGAAC--- 376
||.||.||| ||||| | ||.|.||| ||||
BPUM_1114___y 357 CGATGCGTTA------------CATTT-----AGAAGAGAAT-GAACAAG 388
BSNT_01975___ 377 CCGATACGAGC---CTTTTTCCGTCTGTCGGTTTAA--ACACGGATCAGC 421
|..||||.|.| ||.||||||..|.||...||.| ||||.| ||||
BPUM_1114___y 389 CACATACCATCGATCTCTTTCCGCATATCACCTTTAGCACACCG--CAGC 436
BSNT_01975___ 422 TGAAAGCTGTCACGGAAACAGAGGGCCCGCTGCTCGTGCTTGCAGGTGCG 471
|..||||||||||..|.|.|||.||.||..||||.||.||.||.||.||.
BPUM_1114___y 437 TTCAAGCTGTCACACATAAAGACGGTCCAATGCTTGTACTGGCTGGCGCT 486
BSNT_01975___ 472 GGGAGCGGAAAAACACGGGTGCTGACAGCCCGTGCCGC----------CC 511
||.|||||.||||||.|.||.||||||||..|.||.|| .|
BPUM_1114___y 487 GGTAGCGGGAAAACAAGAGTCCTGACAGCAAGAGCGGCTTATCTCATGTC 536
BSNT_01975___ 512 ACATGATCGAACACTTAGGCATACCGCCTGAAAATATGCTGCTTGTCACC 561
||||.||| .|||.||..||.|..||||..|.||.||.||.
BPUM_1114___y 537 ACATCATC----------ACATTCCTGCTCACCATATCTTACTCGTGACG 576
BSNT_01975___ 562 TTTACAACAAAAG-CTGTCGCTGAAATGAAAGAGCGTATGGCCAACCAGT 610
||.||.||||||| |.||.| ||||||||||||..|..||..|||.||.|
BPUM_1114___y 577 TTCACCACAAAAGCCAGTAG-TGAAATGAAAGAAAGACTGCGCAAGCAAT 625
BSNT_01975___ 611 A-CGGATTACAGCCGGCAAAAGTCAG--AAGACTTGTGACAGGAACATTC 657
| |.| .|.||.||..||.|||..|| ||| |.||||||||.||.|||
BPUM_1114___y 626 ATCAG-CTGCACCCATCACAAGCAAGCCAAG--TGGTGACAGGCACCTTC 672
BSNT_01975___ 658 CACAGTCTGTTTTATAAGATCTTGTATCACTCTAATTCTGCT-------- 699
||||||||.|||||||| |||.|||||
BPUM_1114___y 673 CACAGTCTTTTTTATAA----------------AATGCTGCTTCACGATG 706
BSNT_01975___ 700 --------AAATGGAACGGTGAGCATCTGCTGAAAATGGAGTGGCAGCGG 741
|||||||||||..||||.|||.|.||..|.||.||||||...
BPUM_1114___y 707 ACGCAAACAAATGGAACGGCCAGCACCTGATCAAGTTTGATTGGCAGAAA 756
BSNT_01975___ 742 GAACAATATATCAAAAAAGCACTCTATGAA-GAAGGCATCGATGAGAAAG 790
||.||.||.||....|||||..|| ||||| |||||..|.|||||.||||
BPUM_1114___y 757 GAGCAGTACATTCGGAAAGCCATC-ATGAATGAAGGACTTGATGAAAAAG 805
BSNT_01975___ 791 AATTCCCAGTTGACCAAGCTCTGC-AGCAGATCGGTTTTTGGAAAAACAC 839
|.|.|||....||.||||..|||| |.|| |||||.|.|||||||||..|
BPUM_1114___y 806 ACTACCCTACCGATCAAGTCCTGCAATCA-ATCGGCTATTGGAAAAATGC 854
BSNT_01975___ 840 TTATGTCCCAAATGAACGCATCCC---TCTAAAAGATGAGTGGGAAAAAC 886
||...|.|||...|| |.|.|| |.|.||.|||||...||||||||
BPUM_1114___y 855 TTTCTTACCAGGCGA---CCTTCCTGATTTGAAGGATGAAAAGGAAAAAC 901
BSNT_01975___ 887 AAGTTT-----ATCGTTTATATGAACATTATGAACGCCAG-AAAAAAGA- 929
|..|.| ||| |||.||..||||||| ||| |||||.||
BPUM_1114___y 902 ACATGTGGACGATC-----TATCAATCTTATGAA---CAGCAAAAACGAG 943
BSNT_01975___ 930 ACA--CAGCCAATTTGATTTTGATGACATGGC--TTCAGCCTGCTATG-A 974
||| ||| ||||||||.|||||||||||||| || ||||||| || |
BPUM_1114___y 944 ACAATCAG-CAATTTGACTTTGATGACATGGCGATT--GCCTGCT-TGCA 989
BSNT_01975___ 975 ATTGTTTATCGAGCGGCCTGACCTTCTGGAACAATATCAATCTCGGTTTA 1024
..||.|.|..||.|.||||||.||.||..|||..||||||...|||||..
BPUM_1114___y 990 CATGCTGACAGAACAGCCTGAACTGCTAAAACGGTATCAAGACCGGTTCC 1039
BSNT_01975___ 1025 CGTATATCTTAATTGATGAGTTTCAGGACATTAATCCGGTTCAATA-CAA 1073
..|||||.||..|.|||||.||||||||.||.|||||.|||||||| |||
BPUM_1114___y 1040 AATATATATTGGTGGATGAATTTCAGGATATAAATCCAGTTCAATATCAA 1089
BSNT_01975___ 1074 ---AATCATGCAAAT-GCTCGCCAGCCCGGAGCAAAACCTGTGC------ 1113
|.||| ||.|.| ||| |||| ||.|||.||
BPUM_1114___y 1090 TTGATTCA-GCTATTAGCT---------GGAG---AATCTGAGCAGCTAT 1126
BSNT_01975___ 1114 --TGTGTCGGAGACGATGACCAGTCCATCTACGCGTTTCGCGGAAGCAAT 1161
||||||||.||.|||||.||..||||.||.||.|||.|.||.||.|||
BPUM_1114___y 1127 TTTGTGTCGGTGATGATGATCAAGCCATTTATGCCTTTAGGGGCAGTAAT 1176
BSNT_01975___ 1162 CCGTCTTTCATTCTTGATTTTCAAA-AGGATTATCCGGGAGCGAAGACGA 1210
||..||||||||||||| .|||||| .|||.||.||....||..|||...
BPUM_1114___y 1177 CCTGCTTTCATTCTTGA-ATTCAAACGGGACTACCCTTCGGCTCAGATTG 1225
BSNT_01975___ 1211 TCTATTTAACTGCGAACTACAGGTCTACGCACC---CGATCGTCTCTAGT 1257
||.|||||..|||.||.|||.|.| ||||.| ||||.|||.|.|||
BPUM_1114___y 1226 TCCATTTACATGCCAATTACCGCT---CGCATCATACGATTGTCGCAAGT 1272
BSNT_01975___ 1258 GCTGATATCGTTGTGAAAAAGAACAAAAACA-----GATATGCCAAAACG 1302
||.|||..|.||.|.||.| ||||.|| |.||||..|||||.
BPUM_1114___y 1273 GCCGATGCCATTATTAAGA-----AAAATCAGCATCGTTATGAGAAAACA 1317
BSNT_01975___ 1303 CTTGAAGCGGCCCG--CGATGACATTCAGGTC--CCTGTGCTGTTTTATC 1348
.|..||||.|.||| ||..||||.|| | |||..|||.|||||||
BPUM_1114___y 1318 TTAAAAGCCGTCCGATCGGAGACAATC----CCTCCTACGCTCTTTTATC 1363
BSNT_01975___ 1349 CTTATGATGAAGAGGAAGAAGCCACAATGGTCGTTTCCGATATCAAAGAA 1398
|.|||||.||.||.||.|||||.||.|||.||||..|.|||||..|.||.
BPUM_1114___y 1364 CATATGACGAGGAAGAGGAAGCGACCATGATCGTGGCAGATATTCAGGAG 1413
BSNT_01975___ 1399 AAAATTCAAAATGGAGCCAGTCCAGAA-GA-CTTTGCG-GTTCTTTACCG 1445
||||||.||||.||.||.|..|| ||| || .|.|||| |.||||| ||
BPUM_1114___y 1414 AAAATTAAAAACGGCGCAAAACC-GAACGATATCTGCGTGCTCTTT--CG 1460
BSNT_01975___ 1446 CACAAACAGCGGAGGCCGTGCTATATATGAAAGGCTTCATCAATCGTCAA 1495
|||.||.|..|||||.|||||.||.|||||..|.||.||||||||..|.|
BPUM_1114___y 1461 CACCAATACGGGAGGTCGTGCGATTTATGAGCGTCTGCATCAATCTGCGA 1510
BSNT_01975___ 1496 TTCCGTAT-ACAGCTGACCGCGGC----GTCCAATCGTTTTACAGCAGAC 1540
|||||||| | |||.|.||| |||.||.|.|||||||||||||
BPUM_1114___y 1511 TTCCGTATGA-----GACGGAGGCTGGTGTCAAAGCCTTTTACAGCAGAC 1555
BSNT_01975___ 1541 GGATCGTCCGCCAG--ATTCTCGCCT-----ACTTGTACGCCAGCCAAAA 1583
|.||.||.|| || .||||||||| .||| || ||.||..|
BPUM_1114___y 1556 GAATTGTTCG--AGTTCTTCTCGCCTTTCTCTCTT-TA----AGTCAGGA 1598
BSNT_01975___ 1584 TGAGGATGATACCGAAGCGATTAAACACTTGCTTCCCGCCTTGTTTTTAA 1633
||..||||||...|..||.||.|||||..|||||||.|..||.|||||||
BPUM_1114___y 1599 TGCTGATGATGTGGCCGCTATGAAACAGCTGCTTCCGGTATTCTTTTTAA 1648
BSNT_01975___ 1634 AACAGTCCG-CTTTGAATACGCTGAAGGCGCTCTCGATCACAGAGGACTG 1682
|.||| |.| |.||.||.||..||||||||.|..|.||.||.||.||.||
BPUM_1114___y 1649 AGCAG-CAGACCTTAAACACAATGAAGGCGTTGACCATTACGGAAGATTG 1697
BSNT_01975___ 1683 TACCATGATCAAAGCGCTGGCCAAATTGCCTGATCTGAAGCCATTCCAGC 1732
|.|.|||.||.|.||.||.|..|||.|..|.|||.|..||||.||.||
BPUM_1114___y 1698 TTCAATGGTCGACGCACTCGGAAAACTAACAGATATTCAGCCGTTTCA-- 1745
BSNT_01975___ 1733 TGGACA-AAATCAAG--AAAATC----GTACCGTTTTTTGCAAGCCTCCG 1775
||| ||| ||| |.|||| ||.||..|.| ||||
BPUM_1114___y 1746 ---ACAGAAA--AAGTTACAATCCATTGTCCCTCTGT---------TCCG 1781
BSNT_01975___ 1776 CACG--ATGAAGCCCGTAGAAGCCATC--AC-CT-TTGCA------GAAG 1813
|||| |.||| ..|..|||||.|| || || |.||| |||.
BPUM_1114___y 1782 CACGTTACGAA---ATTTAAAGCCGTCTGACGCTGTGGCATTTATTGAAC 1828
BSNT_01975___ 1814 GAAAAAT-GGGCT---TCTCCGAGTATTTAAAAAAGCGGGGCAATGAGGG 1859
.|||.|| ||||| | ||.||.||||||||.||.|..|||||
BPUM_1114___y 1829 AAAAGATGGGGCTAGGT----GATTACTTAAAAAAACGAGTGAATGA--- 1871
BSNT_01975___ 1860 CAACAA----GCTGGAAAAAGGTTCCGATGACCTGCGCGATATCAAGGTT 1905
.||.| |||.||||||||..|.||||||.|.||.|||.|.||...|
BPUM_1114___y 1872 -TACGAATGTGCTTGAAAAAGGGACGGATGACGTACGAGATGTGAAAACT 1920
BSNT_01975___ 1906 GTCGCCAAGAAG-TTCAAAACGATTCCTGACTTTCTTGCCCACGTAGACC 1954
|..||||| |.| ||..||||||||...|.||||||.||.||.|..||.|
BPUM_1114___y 1921 GCTGCCAA-ACGCTTTGAAACGATTGAAGCCTTTCTCGCACATGCCGAAC 1969
BSNT_01975___ 1955 ATATGAGGGCCGCTGA----GAAAAACAGAACGGATGAACATGGCGTTCA 2000
||||||.|.|.||.|| ||||| |||.||.||||..||.|||||
BPUM_1114___y 1970 ATATGAAGTCTGCCGAAAAGGAAAA----AACAGACGAACCAGGTGTTCA 2015
BSNT_01975___ 2001 GCTGATGACCATTCACCGGTCAAAAGGCCTTGAATTCAAAACAGTCTACG 2050
|||.|||||.||.|||||..||||.||.||.||||||.||||.||.|||.
BPUM_1114___y 2016 GCTCATGACGATCCACCGTGCAAAGGGACTGGAATTCCAAACGGTGTACA 2065
BSNT_01975___ 2051 TGTTAGGCACT------GTAGACGGTTCGATTCCGCACGATTTCTCATTA 2094
| |||| ||.|||||..|..||||.||.|||||||||.|.
BPUM_1114___y 2066 T------CACTTGTGTGGTCGACGGGGCACTTCCACATGATTTCTCACTC 2109
BSNT_01975___ 2095 GA--AACGGCAAGAAAAGGAGACGAGGCCGCTCTTGAGGAGGAAAGA-CG 2141
|| ||| ..|||||.||.||.||.|..|| ||| |||.| |||| ||
BPUM_1114___y 2110 GATGAAC--TCAGAAACGGCGATGAAGAAGC-CTT--GGAAG-AAGAGCG 2153
BSNT_01975___ 2142 CC---TTTTATATGTAGCCATGACCCGGGCGAAACAGCATTTATATTTGT 2188
|| |.|||||.||.||.|||||..|.||..||||...|.|.|||.|.|
BPUM_1114___y 2154 CCGTTTATTATACGTGGCTATGACAAGAGCTGAACAATCTCTTTATCTAT 2203
BSNT_01975___ 2189 C--TTGCCCCGCTAACAGGCGCGGCAAAACAGCCAACCGCTCAAGATTTT 2236
| ||.|..||.| .||.||.||.|||||.||..|.|||||..|.||||
BPUM_1114___y 2204 CGGTTCCATCGTT--TAGACGAGGGAAAACCGCTCATCGCTCGCGTTTTT 2251
BSNT_01975___ 2237 TGTATCCCCTGCTACAGAA------AGCA--------AG-------ACAG 2265
|.||||||||.|||.|||| |||| || ||||
BPUM_1114___y 2252 TATATCCCCTTCTAAAGAAAAATCGAGCATTATTCACAGAAAAACAACAG 2301
BSNT_01975___ 2266 ----CCCTTGCATCATTAA 2280
|||| ||||
BPUM_1114___y 2302 GCTCCCCT-------TTAA 2313
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