Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01978 and BPUM_1117
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:31
# Commandline: needle
# -asequence dna-align/BSNT_01978___yjcG.1.24716.seq
# -bsequence dna-align/BPUM_1117___ligT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01978___yjcG-BPUM_1117___ligT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01978___yjcG-BPUM_1117___ligT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01978___yjcG
# 2: BPUM_1117___ligT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 552
# Identity: 375/552 (67.9%)
# Similarity: 375/552 (67.9%)
# Gaps: 72/552 (13.0%)
# Score: 1230.5
#
#
#=======================================
BSNT_01978___ 1 ATGAAATACGGAATCGTTTTATTTCCATCAAAAAAGCTTCAAGACCTTGC 50
||||||||||||.|.||||||||||||||||||||..|.|||||..||||
BPUM_1117___l 1 ATGAAATACGGAGTTGTTTTATTTCCATCAAAAAAATTGCAAGATATTGC 50
BSNT_01978___ 51 AAACTCTTACAGAAAGCGCTATGACCCAAGCTACTCTCTAATCCCGCCTC 100
.|||||||||.|||||||.|||||.||.|.|||..|.||.||.|||||||
BPUM_1117___l 51 GAACTCTTACCGAAAGCGTTATGATCCGAACTATGCACTCATACCGCCTC 100
BSNT_01978___ 101 ATTTGACGCTGAGAGCATCCTTTGAATGCGCGGA-GGAGAAAGCGGATCA 149
||||.||.||.|||.||.|.||||||....|||| ..|| ||||.|.|.|
BPUM_1117___l 101 ATTTAACACTTAGAACACCTTTTGAACTAACGGATCTAG-AAGCAGCTGA 149
BSNT_01978___ 150 GCTCGTATCACATTTAAGA-AACATCGCAAAAGAGTCCCACCCACTCGTT 198
|.||||.|||....||||| ||.|| |||||| |.|..||
BPUM_1117___l 150 GGTCGTCTCAACGCTAAGAGAATAT-GCAAAA-----------AATGCTT 187
BSNT_01978___ 199 CTCAAA-----------ATGACAAAATACAGCTCATTTGCGCCTGTCAAT 237
|||..| ||.|.|||||.|||.|||||.||.|||||.||.
BPUM_1117___l 188 CTCCTATTACATTACGTATTAAAAAATTCAGTTCATTCGCTCCTGTAAAC 237
BSNT_01978___ 238 AATGTCATTTACATCAAAGCAGAACCGACGGAAGAGTTAAAAACA----- 282
||.||.|||||.||.||||.||||||||..|||| |||.||
BPUM_1117___l 238 AACGTTATTTATATGAAAGTAGAACCGAACGAAG-----AAATCATGGCG 282
BSNT_01978___ 283 CTCAATGAAA----------AGCTATACACCGGTGTGTTGGCAGGAGAAC 322
|||||||||| || ||.||| |.|.|||...||
BPUM_1117___l 283 CTCAATGAAAGATTGTATGCAG--ATCCAC--------TTGAAGGTACAC 322
BSNT_01978___ 323 AGGAATATAATTTTGTTCCGCATGTGACGGTCGGC-CAAAATCTTTCCGA 371
..||||||...|||||||||||||||||.|| ||| |||||.||.||.||
BPUM_1117___l 323 CTGAATATGCCTTTGTTCCGCATGTGACAGT-GGCTCAAAAACTCTCAGA 371
BSNT_01978___ 372 CGATGAGCATTCAGATGTGC-TGGGACAATTAAAAATGCAGGAAG--TGT 418
.||||||||||||||.||.| |||.|| ||||||..|| ||.||| ||.
BPUM_1117___l 372 TGATGAGCATTCAGACGTTCTTGGTAC-ATTAAAGCTG-AGAAAGATTGA 419
BSNT_01978___ 419 CGCATGAAGAAATCGTTGACCGTTTCCACTTGCTTTACCAGCTGGAAAAC 468
| ||||||||||..|||||.||.||||||.|..|.||.||.||.||.|||
BPUM_1117___l 420 C-CATGAAGAAACAGTTGATCGCTTCCACCTTTTATATCAACTAGAGAAC 468
BSNT_01978___ 469 GGATCGTGGACAGTATATGAAACCTTCTTGCTAGGCAGAGGAG----AAT 514
|||||.|||||.||.||||||||.||..|..|||| |||.||| ||
BPUM_1117___l 469 GGATCTTGGACCGTCTATGAAACATTTATTTTAGG-AGAAGAGGGTTAA- 516
BSNT_01978___ 515 AA 516
BPUM_1117___l 516 -- 516
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