Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01163 and BPUM_1132

See Amino acid alignment / Visit BSNT_01163 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:48
# Commandline: needle
#    -asequence dna-align/BSNT_01163.1.24716.seq
#    -bsequence dna-align/BPUM_1132___rapH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01163-BPUM_1132___rapH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01163-BPUM_1132___rapH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01163
# 2: BPUM_1132___rapH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1231
# Identity:     770/1231 (62.6%)
# Similarity:   770/1231 (62.6%)
# Gaps:         212/1231 (17.2%)
# Score: 2074.0
# 
#
#=======================================

BSNT_01163         1 -TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAAT     49
                      |.||| .|||   |.|..|||||.|.|||||||||.||.||.|||||||
BPUM_1132___r      1 ATGGAG-AAAG---TTCTTTCTTCACATGTAGGTGTGAAAATCAATGAAT     46

BSNT_01163        50 GGTACAAGATGATTCGCCAGTTCAGTGTTCCGGATGCTGAGGTTCTGAAA     99
                     ||||.||.||||||||.||.||||||||.||.|||||.|||.||.|||||
BPUM_1132___r     47 GGTATAAAATGATTCGACAATTCAGTGTACCTGATGCAGAGATTTTGAAA     96

BSNT_01163       100 GCGGAGGTGGAGCAGGACATTCAGAA--GATGGAAGAGGATCAGGATTTG    147
                     ||.|||||.||.||.||.|||  |||  |||||||||.|||||||||||.
BPUM_1132___r     97 GCTGAGGTAGAACAAGAAATT--GAACGGATGGAAGAAGATCAGGATTTA    144

BSNT_01163       148 CTGATCTATTATTCTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTA    197
                     ||.||.||||||....|||||||.|||||.||||||||.|||||||||||
BPUM_1132___r    145 CTCATTTATTATCAATTGATGTGCTTTCGTCACCAGCTTATGCTTGATTA    194

BSNT_01163       198 TTTGGAGCCGGGA-CAGCCTTACGGAAATCGTCCTACAGTGACAGAGCTT    246
                     |.|..|.||   | |||....|||   |||| |||.|.||..|.||..|.
BPUM_1132___r    195 TATCAAACC---ATCAGAAAAACG---ATCG-CCTTCTGTTTCTGATTTG    237

BSNT_01163       247 CTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATA    296
                     .||||.|..|||||||...||.|..|..||||..|.||..|.|||.||||
BPUM_1132___r    238 GTTGATAAAATTGAGAATTCTAATCATCAACTTTCCGGTATGTTGCAATA    287

BSNT_01163       297 CTAC---TCTTTGTTTTTCCGCGGCATGTATGAATTTGACCAA-AAAGAA    342
                     .|||   .|||  |||||..| ||.|||.|||||||| |..|| ||||||
BPUM_1132___r    288 TTACAATGCTT--TTTTTAAG-GGAATGCATGAATTT-AGTAAGAAAGAA    333

BSNT_01163       343 TATGTGGAAGCGATCGGGTATT-----ATCGCGAGGCGGAGAAAGAACTG    387
                     |||||..|.||.||....||||     |||||       .|||||    |
BPUM_1132___r    334 TATGTACAGGCTATTCAATATTACAAGATCGC-------TGAAAG----G    372

BSNT_01163       388 CCGTTTG-------TGTCAGATGAAATTGAGAAAGCGGAATTCCATTTTA    430
                     |.|.|||       |||| |||||.||||||.|||||||.|||||.||.|
BPUM_1132___r    373 CAGCTTGCACTGGTTGTC-GATGATATTGAGCAAGCGGAGTTCCACTTCA    421

BSNT_01163       431 AAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT    480
                     |.|||||.|||||.||.|||...|||||.|||||.|||||.||.||||||
BPUM_1132___r    422 AGGTGGCTGAAGCCTACTATATTATGAAACAAACTCATGTTTCTATGCAT    471

BSNT_01163       481 CATATTCTTCAA-GCCTTAGACATTTATCAAAACCAT--CCCTTATACAG    527
                     ||.| ||.|.|| ||..||||.||||||.||.|.|||  .|..||||.||
BPUM_1132___r    472 CACA-TCATAAAGGCGCTAGATATTTATAAAGAACATGAACAGTATAGAG    520

BSNT_01163       528 CATTAG--AACGATACAAAGCTTGTTTGTGATCGCCGGCAACTATGATGA    575
                       ||.|  ||  ||.|||||..|..||||.||.||.||.||.||||||||
BPUM_1132___r    521 --TTCGTCAA--ATTCAAAGTCTAATTGTCATAGCAGGAAATTATGATGA    566

BSNT_01163       576 TTTCAAACAT----TATGATAAAG-CGCTCCCGCATTTAGAAAAGGC-GC    619
                     |||    |||    ||||| |||| ||.|.|..|||||   ||||.| ||
BPUM_1132___r    567 TTT----CATGAGATATGA-AAAGTCGTTGCAACATTT---AAAGACTGC    608

BSNT_01163       620 ---TGGAATTGGCCATGGACATTCAAA--ATGACAGGTTTA-TCGC----    659
                        |..|||| ||..|||.|  .||||  ||.| |.||||| |.||    
BPUM_1132___r    609 TTATTCAATT-GCTGTGGGC--GCAAACGATCA-ACGTTTAGTAGCAAAA    654

BSNT_01163       660 -CATTTCTCTATTGAACATCGCGAACAGCTATGACAG---ATCA--GGAG    703
                      |||     ||||.||.||.|..||.|..|||||.||   ||||  |.|.
BPUM_1132___r    655 ACAT-----TATTAAATATTGGTAATACATATGATAGGCAATCAAGGTAT    699

BSNT_01163       704 ACGATCAGATGGCTGTAGAACATTTCCAAAAAGCGGCGAAAGTAAGCA--    751
                     |    |||| |||..||.|.||||   |.||||..|.|..||..|.||  
BPUM_1132___r    700 A----CAGA-GGCAATAAAGCATT---ATAAAGAAGTGTTAGATATCATT    741

BSNT_01163       752 ------GAGAGAAAGTGCCTGA-----------TCTGCTTCCGAAAGTCT    784
                           || |.||||||.|..|           |||..||     ||| |
BPUM_1132___r    742 TCTTCGGA-AAAAAGTGACATAAAGCCAATCACTCTATTT-----AGT-T    784

BSNT_01163       785 TGT-TTGGATTAAGCTGGACA----TTATGTAAAGCGGGCCAAACACA-G    828
                     ||| ||||   ..||||.|||    |.||           |||||..| |
BPUM_1132___r    785 TGTGTTGG---TCGCTGTACAAGTCTAAT-----------CAAACTGATG    820

BSNT_01163       829 AAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTC    878
                     || |||..||.|.||.|.||.||||||.||    ||||        .|||
BPUM_1132___r    821 AA-GCGGATCTGCTCGTTGAAGAAGGACTA----ATAT--------ATTC    857

BSNT_01163       879 TCACAAATTTTATAAAGAATT------GTTTC-TGTTCTT----GC----    913
                      |.||||   ..||||..|||      ||.|| ||||.||    ||    
BPUM_1132___r    858 -CTCAAA---GGTAAATGATTCGCTAAGTGTCTTGTTATTTAAAGCATTA    903

BSNT_01163       914 -AGGCCGTGTACAAGGAGACTGTTGA--------TGAACGAAAAATTCAT    954
                      |.||..|.||.|.|||.||||.|||        ||||.|||...||  |
BPUM_1132___r    904 AAAGCTATTTATATGGATACTGATGAACAGGCTTTGAAAGAAGTGTT--T    951

BSNT_01163       955 GATCTTTTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGC   1004
                     |||.|         |||.|||.|||||||.||.||.|..||..|.|||||
BPUM_1132___r    952 GATAT---------TTTTGAAGAAAAGAAACTACATGTCTATGTGGAAGC    992

BSNT_01163      1005 ATGTGCCCGGAGTG-CTGCCGCTGTTTT-TGAAAGCAGCTGTCACTTTGA   1052
                     ||.|||.|..|||| |.|  |.|.|||| |||||..|...|..|||||||
BPUM_1132___r    993 ATTTGCTCAAAGTGTCGG--GTTATTTTATGAAAAAAAAGGGGACTTTGA   1040

BSNT_01163      1053 ACAAGCCGCTGCGTTTTATCGGAAAGTG--CTGAAAGCCCAAGAAGATAT   1100
                     |.||||.||.|..|.||| |.||||| |  ||.||.||.|||.|.|||||
BPUM_1132___r   1041 AAAAGCTGCCGAATATTA-CAGAAAG-GCTCTTAAGGCTCAAAATGATAT   1088

BSNT_01163      1101 TCTAAAAGGAGAGTGTTTATATGCCTATTAA   1131
                     ||.|||||||||||||.|.||||..||||||
BPUM_1132___r   1089 TCAAAAAGGAGAGTGTCTGTATGATTATTAA   1119


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