Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06255 and BPUM_1144

See Amino acid alignment / Visit BSNT_06255 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:41
# Commandline: needle
#    -asequence dna-align/BSNT_06255___yosT.1.24716.seq
#    -bsequence dna-align/BPUM_1144___yosT.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06255___yosT-BPUM_1144___yosT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06255___yosT-BPUM_1144___yosT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06255___yosT
# 2: BPUM_1144___yosT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 527
# Identity:     276/527 (52.4%)
# Similarity:   276/527 (52.4%)
# Gaps:         154/527 (29.2%)
# Score: 627.0
# 
#
#=======================================

BSNT_06255___      1 -------------TTGAAAATAACTATTG-AAGAATTACCTGAATCAAGG     36
                                  |||||       ||.| |||.|.||  ||||     |
BPUM_1144___y      1 ATGAATTACAAAATTGAA-------ATCGTAAGCAATA--TGAA-----G     36

BSNT_06255___     37 ATTGCTTATTTCAGAAATGTTGGGGAGTACGGT-GAAAAGCAAAACAAAG     85
                     ||.|..|||.|.||.|||...||....||.||| |.|||| ||||...||
BPUM_1144___y     37 ATGGTGTATATGAGGAATAAAGGACCATATGGTAGCAAAG-AAAATGTAG     85

BSNT_06255___     86 AATTAATGGAGACTTTTAAAAAGTGG-----GCAA----AATTGAATGAT    126
                     |..|.|||.|||..||||||.|.|||     .|||    ||||.||||||
BPUM_1144___y     86 AGATGATGAAGAGATTTAAACAATGGATCAATCAACATCAATTAAATGAT    135

BSNT_06255___    127 GTATTTGATAATTCTACAATTTTAGGCATA----------------CCGC    160
                     |                ||||..|||.|||                ||.|
BPUM_1144___y    136 G----------------AATTAAAGGAATATGGTATATATGGTGTTCCTC    169

BSNT_06255___    161 AAGATAACCC---AGAGATTACTCCTAAAGAGGAATGTCGTTATGATGTT    207
                     |||||.|.||   |.|.|||||.||   |||..||||..|.||.|| ..|
BPUM_1144___y    170 AAGATGATCCTGGAAAAATTACACC---AGAAAAATGCAGATACGA-CCT    215

BSNT_06255___    208 TGTGTTG-TTATAAATAAAGATTTGAATGTGAAAAAACCAGCTCATGTTG    256
                     |.||||| |.|.|||||.|||||    |.|.||||.|.||   .|||.||
BPUM_1144___y    216 TATGTTGATGACAAATAGAGATT----TCTCAAAAGATCA---AATGGTG    258

BSNT_06255___    257 GAGA------ATTTTCTGGTGGGAAA-TATGCTGTTTTCTTGC-TTGAC-    297
                     .|||      ||.||...|.|||||| ||||||||.|  ||.| .|||| 
BPUM_1144___y    259 CAGACTAGACATGTTGAAGGGGGAAAGTATGCTGTGT--TTACAGTGACA    306

BSNT_06255___    298 CATACAAAAGAGGCAGTCAGAGA----CTTTTGGGGCAATATTTCTTCTG    343
                     |||||||..||...|||    ||    .||||||.||.| |||.|.||  
BPUM_1144___y    307 CATACAACCGAAAAAGT----GAATTTGTTTTGGAGCCA-ATTGCCTC--    349

BSNT_06255___    344 AGATAGAAAGAAATAATC--TATCAAT-AAGAGAACA----------ACC    380
                               ||||.|||  .|.|||| ||..|||||          |.|
BPUM_1144___y    350 ----------AAATGATCCAAAACAATCAATTGAACATGCGTCCGGCATC    389

BSNT_06255___    381 AATTATAGAAAGATATACTCCACAAATGATTGATAA-------TCATTTG    423
                     .|||||.||.|||||||              ||.||       .||  ||
BPUM_1144___y    390 TATTATGGAGAGATATA--------------GAGAAGAAGAAGGCA--TG    423

BSNT_06255___    424 TGTGAAATATTAATTCCTATACAGTAA    450
                     |||||..|.|||.|.|||||....|||
BPUM_1144___y    424 TGTGAGTTCTTACTACCTATTTTTTAA    450


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