Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01737 and BPUM_1163
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:14
# Commandline: needle
# -asequence dna-align/BSNT_01737___yhfF.1.24716.seq
# -bsequence dna-align/BPUM_1163.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01737___yhfF-BPUM_1163.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01737___yhfF-BPUM_1163.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01737___yhfF
# 2: BPUM_1163
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 556
# Identity: 246/556 (44.2%)
# Similarity: 246/556 (44.2%)
# Gaps: 245/556 (44.1%)
# Score: 461.5
#
#
#=======================================
BSNT_01737___ 1 ATGAAGATTTATAAGCTGAAAAGCACATTCGGCTGGGAAGGTGATGACGG 50
||| ||.|.|||.|||||.||....|||||| ||..
BPUM_1163 1 ATG---------AATCAGAAGAGCACCTTATTTTGGGAA-------ACAT 34
BSNT_01737___ 51 GTTGG----------GAGAA----------------CAGCTGATTC---- 70
.|||| .|||| ||.|||.|||
BPUM_1163 35 ATTGGAAAGAAAAATTAGAAAGCGCACCAATTGACGCATCTGTTTCCGCT 84
BSNT_01737___ 71 -----------AGCAGATCC-------TTGCT-----------------G 85
||||||.|| ||||| |
BPUM_1163 85 TGGGCATTTGGAGCAGACCCAGATCATTTGCTTGACCTTGTTCTGCAAGG 134
BSNT_01737___ 86 GAGAAAAAACCGCTACGTGCGC-GCCGAAATCATTATATTC-AAAAGATG 133
|| |||||||.||.||.||..| | ||.||| ||.|.|.| ||||| |
BPUM_1163 135 GA-AAAAAACAGCGACTTGTTCTG--GACATC-TTTTTTACGAAAAG--G 178
BSNT_01737___ 134 AATTGAGG-GACGTTTATCAAA--CAGCG---------GGTCAGCTTGTT 171
|| .||| |.||.|| .|||| ||| | |||||
BPUM_1163 179 AA--CAGGAGCCGCTT-CCAAAGGCAG-GACAATATGCGGTCA------- 217
BSNT_01737___ 172 ACCGTTTATGATAAACATGACAATCCAAGATGCAAT-ATAAAAGTGAC-- 218
|||..||.|..||||||.|.|||| |.||.|| |||.|..|.||
BPUM_1163 218 ----TTTTGGACAGCCATGACGAACCAA-AAGCCATCATAGAGATTACAC 262
BSNT_01737___ 219 ----AGATGTCTTTGAAACCACCTTTGGTGCGCCTGAT--ATGAGGTT-- 260
|||||||.| ||| ||| ||||||||
BPUM_1163 263 ATGTAGATGTCAT------------------GCC-GATGAATGAGGTTCC 293
BSNT_01737___ 261 --AGTCA-------------AAGGAGAGGG-------------CA----- 277
|.||| ||||.||.|| ||
BPUM_1163 294 AGAATCATTTGCCCGAGCAGAAGGTGAAGGTGATCTTTCTTATCAATATT 343
BSNT_01737___ 278 ---ACGGAGACC-----GAATTGCGGAGTTTCACGAGGACCA-TCGGATG 318
||.|||.|| ||||| |||||| ||.|.|| |||.|
BPUM_1163 344 GGTACAGAGCCCATCAAGAATT------TTTCAC-AGAAGCACTCGAA-- 384
BSNT_01737___ 319 GCATGGGCGGAACTGATCAAAAGCGGTGAACTGGAGCTGAATGAGGA--- 365
|.|.||.||| |.||..|.||.||.||
BPUM_1163 385 -------CCGTACGGAT--------------TAGAATTTAAAGAAGACAT 413
BSNT_01737___ 366 --TACTGTTTTG-------ATTACAGAAC-TGTTTGT---GCTTGTTAAA 402
|.||..|||| .||| ||| |||||.| ||||.||||
BPUM_1163 414 GCTCCTCGTTTGCGAGCGATTTA---AACTTGTTTATTCAGCTTCTTAA- 459
BSNT_01737___ 403 GATTAA 408
BPUM_1163 459 ------ 459
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