Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02179 and BPUM_1181
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:38
# Commandline: needle
# -asequence dna-align/BSNT_02179___htrA.1.24716.seq
# -bsequence dna-align/BPUM_1181___htrA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02179___htrA-BPUM_1181___htrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02179___htrA-BPUM_1181___htrA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02179___htrA
# 2: BPUM_1181___htrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1487
# Identity: 893/1487 (60.1%)
# Similarity: 893/1487 (60.1%)
# Gaps: 304/1487 (20.4%)
# Score: 2478.5
#
#
#=======================================
BSNT_02179___ 1 ATGATGGATAACTATCGTGATGAAA----ACAGAACGAAAGGTAATGAGA 46
||||.| ||| |||
BPUM_1181___h 1 -------------------ATGACACATCACA-AAC-------------- 16
BSNT_02179___ 47 ATGAGGTCTTTTTAACGAAAGAGAACGATCAGAGCGCCTCCTACTCGGCC 96
|||| .|||.|| |||.|||
BPUM_1181___h 17 ATGA--------AAACCAA--------------------CCTTCTC---- 34
BSNT_02179___ 97 CGCAATGTCATTCA-----TGATCAGGAG-------AAGAAAAAACGAGG 134
|||..||||| ||| ||.|| ||.||||||.||.|
BPUM_1181___h 35 ----ATGAAATTCAAACATTGA--AGCAGCCACAAAAACAAAAAAAGAAG 78
BSNT_02179___ 135 --ATTCGGATGGTTCAGACCGTTGCTTGGCGGAGTGATCGGCGGCAGTCT 182
|..|||.|||||.|.|||.||..||.||||.||..|.|||||||..||
BPUM_1181___h 79 CCAAACGGCTGGTTTAAACCATTTGTTAGCGGTGTTGTGGGCGGCATACT 128
BSNT_02179___ 183 CGCCCTTGGCATTTACACGT--TTACACCGCTTGGCGACCATGATTC-TC 229
.||..|.||..||| |.|| ||||.||...||.|.|.|||| | ||
BPUM_1181___h 129 AGCGTTAGGTGTTT--ATGTCCTTACGCCATATGCCCAGCATG---CATC 173
BSNT_02179___ 230 AGGACACTGCA--AAACAATCATCCAGCCAGCAGCAAACGCAATCTGTTA 277
| ||||.|.|| ||.|||| || |.||.|| .||||..||..|||..
BPUM_1181___h 174 A-GACAATACAGCAAGCAAT--TC--GGCAACA-AAAACAGAAAGTGTAT 217
BSNT_02179___ 278 CAGCA------ACAAGCACCTCCTCTGAA----TCTAAAAAAA-----GC 312
|..|| |||||..|| || ||.||||.|| |.
BPUM_1181___h 218 CGACAAATGATACAAGTGCC-------AATTCGTCAAAAACAACCGCCGT 260
BSNT_02179___ 313 TCAAGCAGCTCATCTGCATTCAAGAGCGAGGACTCTTCTAAA----ATCT 358
.|||.|| ||| |||||| || ||| ||||
BPUM_1181___h 261 CCAAACA--TCA----CATTCA--------------TC-AAACAACATCT 289
BSNT_02179___ 359 CAGATATGGTAGAAGACCTTTCACCAGCGATTGTCGGTATTACAAATCT- 407
||...|||||.|||||..|.||.|||||.||||||||.|||||||| ||
BPUM_1181___h 290 CAAGCATGGTCGAAGATGTATCGCCAGCCATTGTCGGCATTACAAA-CTA 338
BSNT_02179___ 408 TCAGGCACAA--TCAAACAGCTC------TTTG----TTCGGCTC--TAG 443
|||.||.||| |||||||| .| |||| || || ||.
BPUM_1181___h 339 TCAAGCGCAAAGTCAAACAG-ACATGAGTTTTGGTGATT----TCAATAC 383
BSNT_02179___ 444 TTCTTCTGAT---TC-CAGCGAAGATA----CAG-----------AAAGC 474
..|||.|||| || |||| ||.||| ||| |||..
BPUM_1181___h 384 GCCTTTTGATGAATCACAGC-AAAATAAAAGCAGCCAAGAGGAAAAAACA 432
BSNT_02179___ 475 GGTTCAGGGTCAGGTGTCATTTTCAAAAAA---GAGAATGGCAAGGCTTA 521
|||.||||.|||||.||.|||||||||||| |..| ||||.||.||
BPUM_1181___h 433 GGTACAGGCTCAGGAGTGATTTTCAAAAAATCCGGCA---GCAAAGCCTA 479
BSNT_02179___ 522 TATCATTACAAATAACCACGTCGTAGAAGGGGC--ATCATCACTGAAGGT 569
|.||.|.|||||.|||||||||.|.|||||||| ||.| |||.|..||
BPUM_1181___h 480 TGTCTTAACAAACAACCACGTCATTGAAGGGGCAAATAA--ACTTACAGT 527
BSNT_02179___ 570 ATCTTTATATGACGGCA-------CTGAGGTTACTGCAAAGCTGGTAGGC 612
.||.||..|.||.|||| |..|||| ||..||||.||
BPUM_1181___h 528 CTCCTTGCACGATGGCAAAACCACCAAAGGT-------AAATTGGTCGG- 569
BSNT_02179___ 613 AG-TGACTCGTTAACTGATTTAGCCGTCCTCCAAAT------CAGTGATG 655
|| ||||.||.|.|||||..||||.||..|..|||| ||||
BPUM_1181___h 570 AGCTGACCCGCTGACTGACCTAGCAGTTGTAGAAATTAGTAGCAGT---- 615
BSNT_02179___ 656 ACCACGTCACAAAAGT---GGCAAACTTCGGTGATTCATCTGATCTTAGA 702
||.||.|||||.|| |||| ||.||.|||||.||....||..|.
BPUM_1181___h 616 --CATGTAACAAAGGTCGCGGCA---TTAGGCGATTCCTCCTCGCTGCGT 660
BSNT_02179___ 703 ACAGGCGAGACCGTTATTGCGATTGGGGATCCGCTTGGAAAAGACCTGTC 752
.|.||.||.|||||.||.||.|||||..|.||||||||..||||.||.||
BPUM_1181___h 661 GCTGGGGAAACCGTCATCGCAATTGGAAACCCGCTTGGTGAAGATCTATC 710
BSNT_02179___ 753 CCGCACAGTAACACAAGGAATTGTAAGCGGCGTGGACAGAACGGTTTCAA 802
..|.||.||.||||||||||||||.|||||.||.||..||||.||.||.|
BPUM_1181___h 711 AAGAACCGTGACACAAGGAATTGTCAGCGGTGTCGATCGAACAGTCTCTA 760
BSNT_02179___ 803 TGTCTACATCAGCCGGCGAAACGAGCATTAACGTCATTCAGACAGACGCA 852
||...||||||||.|||||||..||||||||.||.|||||.|||||.||.
BPUM_1181___h 761 TGAACACATCAGCAGGCGAAAGCAGCATTAATGTGATTCAAACAGATGCG 810
BSNT_02179___ 853 GCAATTAATCCAGGTAACAGCGGCGGTCCTTTGTTAAATACAGAC----G 898
||.||.||.|||||.|||||||||||.||..||.| ||| ||| |
BPUM_1181___h 811 GCTATAAACCCAGGAAACAGCGGCGGACCACTGCT---TAC-GACTAATG 856
BSNT_02179___ 899 GCAAAATTGTCGGCATTAACAGTATGAAAATCAGTG----AGGATGATGT 944
|.||..|.||.||.||.|..||||||||.||...|| ||| |||
BPUM_1181___h 857 GAAAGGTCGTGGGGATCACGAGTATGAAGATTTCTGAAACAGG----TGT 902
BSNT_02179___ 945 TGAGGGCATCGGATTTGCCATTCCAAGCAATGACGTAAAACCGATTGCTG 994
|||||||||||||||.||..|.||||.||||||.||.|||||.||.||.|
BPUM_1181___h 903 TGAGGGCATCGGATTCGCGCTCCCAATCAATGATGTCAAACCAATCGCCG 952
BSNT_02179___ 995 AAGAACTGCTGTCTAAAGGCCAAATTGAACGTCCATATATCGGTGTCAGC 1044
|..||||.||..|.|||||..|.|||||.||||||||||||||..|||||
BPUM_1181___h 953 ATCAACTTCTCACAAAAGGAAAGATTGAGCGTCCATATATCGGCATCAGC 1002
BSNT_02179___ 1045 ATGCTTGATCTGGAACAAGTGCCGCAAAATTACCAAGAAGGCACACTCGG 1094
|||||.|||||.|||||.||.|||.|....||.|||.|||..||||||||
BPUM_1181___h 1003 ATGCTAGATCTCGAACAGGTCCCGGACGTGTATCAAAAAGAAACACTCGG 1052
BSNT_02179___ 1095 CCTGTTCGGC------AGCCAGCTGAATAAAGGTGTTTACATCCGTGAGG 1138
.|| | ||.|||||..||.||||.||.|||.||...||..
BPUM_1181___h 1053 TCT------CAAAAATAGTCAGCTTGATCAAGGCGTATACGTCAAAGAAA 1096
BSNT_02179___ 1139 TCGCTTCAGGCTCTCCTGCTGAAAAGGCCGGATTAAAAGCGGAGGATATT 1188
||||..|||||||.|||||.|..||.|||||.|||||..|.||||||.|.
BPUM_1181___h 1097 TCGCCGCAGGCTCACCTGCCGCCAAAGCCGGCTTAAAGTCAGAGGATGTC 1146
BSNT_02179___ 1189 ATCATCGGCCTAAAAGGTAAAGAAATTGATACAGGCAGTGAATTGCG-CA 1237
||.|.||.|.|.||.||.|||.||||..|.|..||.||.|||||.|| ||
BPUM_1181___h 1147 ATGACCGCCATCAATGGGAAACAAATCAAAAACGGAAGCGAATTACGTCA 1196
BSNT_02179___ 1238 ATATCTTATATA--AAGACGCAAAGATCGGTGAAACCGTTGAAGTGA--- 1282
..|.| ||||.| ||.| |||||||.||.|||||| ||||
BPUM_1181___h 1197 TGAGC-TATACACGAATA--CAAAGATTGGAGAAACC------GTGAGCA 1237
BSNT_02179___ 1283 --AAATTC-TCCGAAACGGCAAAGAAATGACGAAAA-----AAATT---- 1320
|.|.|| |.|||||.||.||||||...|||||.| |.|||
BPUM_1181___h 1238 TCACACTCATTCGAAATGGAAAAGAAGAAACGAAGAAGGTGACATTAACA 1287
BSNT_02179___ 1321 -AAACTTGATCAAAAAGAAG---AGAAAACTTCGTAA 1353
|||||..||| .|||.|| || |||.|||
BPUM_1181___h 1288 CAAACTGAATC--TAAGCAGGTCAG-----TTCCTAA 1317
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