Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02180 and BPUM_1183

See Amino acid alignment / Visit BSNT_02180 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:38
# Commandline: needle
#    -asequence dna-align/BSNT_02180___proG.1.24716.seq
#    -bsequence dna-align/BPUM_1183___proC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02180___proG-BPUM_1183___proC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02180___proG-BPUM_1183___proC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02180___proG
# 2: BPUM_1183___proC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 931
# Identity:     516/931 (55.4%)
# Similarity:   516/931 (55.4%)
# Gaps:         221/931 (23.7%)
# Score: 1192.0
# 
#
#=======================================

BSNT_02180___      1 ATGGA-ACAGATTGGATTGATTGGATATGGCAGCATGGCGGATATGAT--     47
                     .|||| ||| ||||||.|.|||||||||||.||||||||.||||||||  
BPUM_1183___p      1 GTGGAGACA-ATTGGAATCATTGGATATGGAAGCATGGCAGATATGATGG     49

BSNT_02180___     48 CGCCAGACAGCTGTTGAAACATGAA-----CAA-----ATAAAAGAGAAT     87
                     .||.|.|..|  ||||.||.|.|||     |||     ||.||  |..||
BPUM_1183___p     50 TGCAAAAATG--GTTGGAAAAAGAAGTACTCAATGCCCATCAA--ATCAT     95

BSNT_02180___     88 GAGCTATTTATTGAGACGAG-AACAAAGGGGGAGCGGCTGCGGGCACTCC    136
                     ||.|.|  ||.| |||.|.| ||||      ||.||.||||....|||  
BPUM_1183___p     96 GATCCA--TACT-AGAAGTGAAACA------GACCGCCTGCTTCAACT--    134

BSNT_02180___    137 TGTCAGATTATCCAAACGTATCGGCTGATCCGTTGGAGAATTGGGCAAAT    186
                                 ||||  .||.|||  |||     .||||.|    ||||
BPUM_1183___p    135 ------------CAAA--GATAGGC--ATC-----AAGAAAT----AAAT    159

BSNT_02180___    187 ACGTGCCAATTGA------------------------TTTTGATATGCGT    212
                     |..|||..|||.|                        ||||.||.|||||
BPUM_1183___p    160 ATCTGCTCATTAAACGAACTTTCTGCATGTGATGTACTTTTTATCTGCGT    209

BSNT_02180___    213 CCCGCCG---------CTCCATGTCATCGA--AACAATGCGCCGTCTGCA    251
                     .||||||         ||..||||..||||  |||    .|||.||.|||
BPUM_1183___p    210 ACCGCCGCTTGCTGTACTTGATGTACTCGATCAAC----TGCCTTCAGCA    255

BSNT_02180___    252 CCCGTATGTGAACAGAAATACTCACATCGTATCCATAGCTGCCGGTGTGC    301
                     .||..||..|..|    |||||      ||.||..||||.||.|.||||.
BPUM_1183___p    256 GCCAAATCGGTTC----ATACT------GTGTCAGTAGCCGCGGCTGTGA    295

BSNT_02180___    302 CGCTGCGTC---TTTTGGAGGCAGA-AACAGAAGCGGGTATCTCACGTGT    347
                     || |..|.|   ||.|..|.|||.| .||..||.|   .||.|||.|   
BPUM_1183___p    296 CG-TTAGACAAGTTATCAAAGCATACGACTCAACC---AATTTCAAG---    338

BSNT_02180___    348 TATTCCTGCCA----TTACGTCCGAAGC----AGAAGCTGGCATCTCACT    389
                      ||.|.|.|||    |.|||||   |||    .||| |.|||.|.||.||
BPUM_1183___p    339 -ATACATCCCAACGCTCACGTC---AGCTGTTGGAA-CAGGCGTATCCCT    383

BSNT_02180___    390 TGTCGTTCACAGTGAAGCACTGGCTGCAGAG---AAAAAAGAACGTCTGA    436
                     .||.|..||..|.|||  ||| ||||..|||   .||||.|.||||.||.
BPUM_1183___p    384 CGTTGCGCATGGCGAA--ACT-GCTGGGGAGGAAGAAAAGGCACGTTTGC    430

BSNT_02180___    437 AT-GAATTGTTATCGGTTTTCAGCCGT-------GTTCGAGAAATCAAAG    478
                     || |        ||...|||||||..|       ||.||.|||||..|.|
BPUM_1183___p    431 ATCG--------TCTCCTTTCAGCTTTTAGTATCGTACGTGAAATAGAGG    472

BSNT_02180___    479 AATCGA--ATGTTGATGCGGCCAGCAATTTAACGAGCTCGGCACCGGGAT    526
                     ||  ||  |..||||||||||.||.||.||.||.|||||..|.||.||.|
BPUM_1183___p    473 AA--GATCAGTTTGATGCGGCGAGTAACTTGACAAGCTCATCTCCTGGTT    520

BSNT_02180___    527 TCATAGCCGCAATCTTTGAAGAGCTGGC-ACTGTCTGCCGTCAGAAACAG    575
                     |.||.||.||..|.||||||||..|||| |..| |.||.||.|||||.||
BPUM_1183___p    521 TTATCGCTGCTCTTTTTGAAGAAATGGCGAAAG-CCGCTGTGAGAAATAG    569

BSNT_02180___    576 -CAGCCTGTCCAAAGAAGAAGCCTTTGATTTTCTGATTCATTCGCTATAC    624
                      .|| ||.|||..|||.|||||.|.|||.|||.|.|...||.||||.|..
BPUM_1183___p    570 TGAG-CTTTCCTTAGAGGAAGCGTATGAATTTTTAACATATGCGCTTTTA    618

BSNT_02180___    625 GGAACTGG-CAAGATGCTGATCGAAAAAAATATGTCTTTCGAGGAGAC--    671
                     ||.||.|| |||| |.||..|.|||              |||||...|  
BPUM_1183___p    619 GGCACAGGTCAAG-TCCTTGTAGAA--------------CGAGGCCTCAC    653

BSNT_02180___    672 ----GCTGGAAC--------GTGTTGCAACCAAAGGCGGAATAACGGGAG    709
                         ||||.|||        |.||.||.||.|||||.||.||.||.||||
BPUM_1183___p    654 CTTTGCTGAAACCGTCGATAGAGTGGCGACAAAAGGGGGCATTACAGGAG    703

BSNT_02180___    710 AGGGAGCTGAGGTGATACA--------CGCCTCTG-TGCCGGACGTTTTT    750
                     |.||.||.||||||||.||        |.||||.| ||         |||
BPUM_1183___p    704 AAGGCGCCGAGGTGATTCAAAAGCAGGCACCTCAGATG---------TTT    744

BSNT_02180___    751 GATGAGGTGTTTGAAAGAACCCTGAAAAAATATGAACTGCTTACAGAACA    800
                     |||||..|||.|..|..||||.||||.||||||||||..||.|.|..|||
BPUM_1183___p    745 GATGATCTGTATACACAAACCATGAAGAAATATGAACAACTGAAATCACA    794

BSNT_02180___    801 GGTTGGTAA--------ACAGACATGA----    819
                     |.|   |||        |||.|||..|    
BPUM_1183___p    795 GAT---TAACGAAGCGGACAAACACCACTAA    822


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