Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02185 and BPUM_1188

See Amino acid alignment / Visit BSNT_02185 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:39
# Commandline: needle
#    -asequence dna-align/BSNT_02185___dppE.1.24716.seq
#    -bsequence dna-align/BPUM_1188___dppE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02185___dppE-BPUM_1188___dppE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02185___dppE-BPUM_1188___dppE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02185___dppE
# 2: BPUM_1188___dppE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1717
# Identity:    1176/1717 (68.5%)
# Similarity:  1176/1717 (68.5%)
# Gaps:         179/1717 (10.4%)
# Score: 3905.5
# 
#
#=======================================

BSNT_02185___      1 ATGAAACGAGTGAAAAAGCTATGGGGCATGGGTCT-TGCATTAGGACTTT     49
                     ||||.|      ||||||..||||..|||..||.| ||          ||
BPUM_1188___d      1 ATGAGA------AAAAAGGGATGGATCATCAGTATATG----------TT     34

BSNT_02185___     50 CGTTTGCGCTGATG---------GGGTGCACAGCAAATGAACAGGCCGGA     90
                     .|||..|..|.|||         ||.||.|||||.|||||.||.||.||.
BPUM_1188___d     35 TGTTCACAATCATGCTGCTCGCAGGATGTACAGCCAATGAGCAAGCAGGG     84

BSNT_02185___     91 AAAGAAGGCAGTCATGATAAGGCAAAAACCAGCGGAGAAAAGGTGCTGTA    140
                     ||||        .||.||.|.|||||.|    .||.||||||  ...|||
BPUM_1188___d     85 AAAG--------GATCATCAAGCAAAGA----GGGTGAAAAG--AAAGTA    120

BSNT_02185___    141 T-----GTAAATAATGAAAATGAACCGACTTCATTCGATCCGCCGATCGG    185
                     |     .|||||||.|||||.||||||||.||.||.|||||.|||||.||
BPUM_1188___d    121 TTAACCTTAAATAACGAAAACGAACCGACGTCGTTTGATCCTCCGATTGG    170

BSNT_02185___    186 CTTTAATAATGTGTCATGGCA--GCCGTTAAATAACATCATGGAGGGGCT    233
                     .|||||||||||.||.|||||  |.|  |.||||||.|.||||||||..|
BPUM_1188___d    171 TTTTAATAATGTATCGTGGCAAGGAC--TCAATAACCTAATGGAGGGATT    218

BSNT_02185___    234 GACGCGTCTTGGCGAAGATCATGAGCCCGAGCCGGCAATGGCGGAGAAAT    283
                     .||..|.||....|||.|.||.||.||....||.||||||||.||.||||
BPUM_1188___d    219 AACAAGACTGAATGAAAAGCACGAACCATCTCCTGCAATGGCTGAAAAAT    268

BSNT_02185___    284 GGTCTGTTTCGAAAGATAATAAAACTTACA-----CATTTACGATTCGGG    328
                     ||....||||.||.|||...|||||.||||     ||||||.|       
BPUM_1188___d    269 GGGAGATTTCAAAGGATGGAAAAACGTACACGTTCCATTTAAG-------    311

BSNT_02185___    329 AAAATGCG----AAATGGACAAACGGAGATCCTGTAACAGCCGGAGACTT    374
                      |.||| |    ||.|||.||||.||.|||||.||.|.|||..|.|||||
BPUM_1188___d    312 -AGATG-GCATCAAGTGGTCAAATGGTGATCCAGTGAAAGCGAGTGACTT    359

BSNT_02185___    375 CGAATACGCGTGGAAGCGGATGCTTGATCCGAAAAAAGGCGCTTCATCGG    424
                     .|||||.||||||||||||.|||||||||||||||.||||   ||.||.|
BPUM_1188___d    360 TGAATATGCGTGGAAGCGGCTGCTTGATCCGAAAACAGGC---TCCTCCG    406

BSNT_02185___    425 CA---TTCCTAGGTTATTTTATTGAAGGCGGCGAAGCATATAACAGCGGG    471
                     ||   |||||||..|||.|.|||||||||||.||.||||.|||||||||.
BPUM_1188___d    407 CATCGTTCCTAGCGTATATGATTGAAGGCGGAGAGGCATTTAACAGCGGA    456

BSNT_02185___    472 AAAGGGAAAAAAGACGATGTGAAGGTGACGGCAAAGGATGATCGAACCCT    521
                     |||||.||.|||||.||.||.||.||.|..||..||.||||...|||.||
BPUM_1188___d    457 AAAGGAAAGAAAGAAGACGTTAAAGTTAGCGCTGAGAATGACAAAACGCT    506

BSNT_02185___    522 TGAAGTTACACTGGAAGCACCGCAAAAATATTT------TCTGAGCGTTG    565
                     |.|.||.|||||||.|...||||||||||..||      |.|||.||   
BPUM_1188___d    507 TAAGGTCACACTGGCATACCCGCAAAAATCGTTCTTAAATATGACCG---    553

BSNT_02185___    566 TGTCCAATCCTGCGTATTTTCCGGTAAATGAAAAGGTCG---ATAAAGAC    612
                        |.||.|||||.|.||||||.||.||||||.||||.|   |.||.|||
BPUM_1188___d    554 ---CAAACCCTGCCTTTTTTCCTGTCAATGAACAGGTAGCGAAGAAGGAC    600

BSNT_02185___    613 AATCCGAAGTGGTTTGC---TGAGGCGGATACATTTGTCGGAAACGGCCC    659
                        ||.||.|||   ||   .||.||..|.||.|||||||||||.||.||
BPUM_1188___d    601 ---CCAAACTGG---GCAAAAGACGCCAAAACCTTTGTCGGAAATGGACC    644

BSNT_02185___    660 GTTTAAGCTGACGGAATGGAAGCATGATGACAGCATCACAATGGAGAAAA    709
                     |||.||||||||.||.||||||||||||||.|||.|.||||||.|.||||
BPUM_1188___d    645 GTTCAAGCTGACAGAGTGGAAGCATGATGAGAGCTTTACAATGAAAAAAA    694

BSNT_02185___    710 GCGACACGTATTGGGA-TAAAGATACAGTGAAGCTTGATAAGGTGAAATG    758
                     |.||.||||||||||| .|||.|| ||||.|||.|.|||.|.|||||.||
BPUM_1188___d    695 GTGAGACGTATTGGGACGAAAAAT-CAGTTAAGTTAGATCAAGTGAAGTG    743

BSNT_02185___    759 GGCGATGGTCAGTGACAGAAATACAGATTACCAGATGTTTCAATCAGGGG    808
                     |..||||.|||||||..||||.|||||.||.||.||||.|||||||||.|
BPUM_1188___d    744 GCTGATGATCAGTGATCGAAACACAGACTATCAAATGTATCAATCAGGAG    793

BSNT_02185___    809 AACTTGATACCGCTTATGTCCCTGCTGAGCTGAGTGATCAGCTGCT---T    855
                     |..|.|||||.||.|.||||||.||.||||..|||||..|.|||||   .
BPUM_1188___d    794 ATTTAGATACTGCCTTTGTCCCAGCAGAGCAAAGTGAAAATCTGCTAAAA    843

BSNT_02185___    856 GATCAGGATAACGT-CAATATTGTTGACCAGGCGGGTCTCTATTTCTATC    904
                     .||.|.|||   || ||| ||||..||||||||.||..|.|..||.||||
BPUM_1188___d    844 AATAAAGAT---GTACAA-ATTGAAGACCAGGCTGGATTGTTCTTTTATC    889

BSNT_02185___    905 GATTTAATGTCAACATGGAGCCATTCCAAAATGAAAACATCAGAAAAGCC    954
                     |..|.|||||.||||||||.||.||.||||||.||||||||.|.|||||.
BPUM_1188___d    890 GTCTGAATGTAAACATGGAACCTTTTCAAAATAAAAACATCCGCAAAGCA    939

BSNT_02185___    955 TTTGCGATGGCTGTGGATCAA----GAGGAAATTGTAAAGTACGTCACGA   1000
                     |||...|||||    ||||||    .|.||.||.|||.|.||.||.||||
BPUM_1188___d    940 TTTCAAATGGC----GATCAACCCGCAAGATATCGTAGATTATGTGACGA    985

BSNT_02185___   1001 AAAATAATGAAAAACCGGCGCGCGCCTTTGTATCGCCTGG-------GTT   1043
                     |||||.|.||.||.||.||.|||||||||||.|||||.||       |.|
BPUM_1188___d    986 AAAATGAAGAGAAGCCAGCACGCGCCTTTGTCTCGCCAGGCATTCTAGAT   1035

BSNT_02185___   1044 TACGCAGCCTGACGGCAAAGATTTCCGTGAAGCAGGCGGAGA-CTTGATC   1092
                     |       |..|.|||.|.||||||.|..||||.|||||.|| |||| |.
BPUM_1188___d   1036 T-------CAAAAGGCGAGGATTTCAGAAAAGCTGGCGGTGATCTTG-TG   1077

BSNT_02185___   1093 AAGCCTAACGA-AAGCAAAGCGAAGC-----AGCTGCTAGAAAAGGGCAT   1136
                     |||   ||||| |||   ||.|||||     ||||..||||||||||..|
BPUM_1188___d   1078 AAG---AACGATAAG---AGTGAAGCTGCAAAGCTATTAGAAAAGGGGCT   1121

BSNT_02185___   1137 GAAGGAAGAAAACTATAATAAGCTTCCTGCGATCACGCTTACTTACAGCA   1186
                     |||.|||||.||||||...||.||.||.||..||||..|.||.|||||.|
BPUM_1188___d   1122 GAAAGAAGAGAACTATTCAAAACTGCCAGCCGTCACATTGACATACAGTA   1171

BSNT_02185___   1187 CAAAGCCGGAGCATAAAAAGATTGCCGAAGCTATTCAGCAAAAATTGAAA   1236
                     |||||||.|||.||||.||.|..||.|||||.||.|||||..|..|||||
BPUM_1188___d   1172 CAAAGCCTGAGAATAAGAAAAAAGCTGAAGCCATCCAGCAGCAGCTGAAA   1221

BSNT_02185___   1237 AATAGC-CTTGGAGTCGATGTAAAGCTGGCCAATATGGAATGGAACGTAT   1285
                     .| ||| ||.||.||.|||||.|||||.|||||.||||||...||.||||
BPUM_1188___d   1222 GA-AGCGCTAGGTGTAGATGTGAAGCTTGCCAACATGGAAGCCAATGTAT   1270

BSNT_02185___   1286 TTTTAGAGGATCAAAAAGCGCTGAAATTCCAATTCTCTCAAAGCTCATTT   1335
                     ||...||.||||||||.||.||||||||.||||||||.|||||.||||||
BPUM_1188___d   1271 TTGCTGAAGATCAAAAGGCACTGAAATTTCAATTCTCACAAAGTTCATTT   1320

BSNT_02185___   1336 TTGCCTGATTATGCAGACCCTATCAGTTTTCTGGAAGCCTTTCAAACGGG   1385
                     ||..|.||.||||||||.||.||||.|||.||.|||..|||||||||.||
BPUM_1188___d   1321 TTAGCAGACTATGCAGATCCGATCAATTTCCTAGAAAGCTTTCAAACAGG   1370

BSNT_02185___   1386 TAATTCGATGAACCGCACAGGCTGGGCCAATAAAGAATAC----GATCAG   1431
                     .|||.|.||||||||.|||||.|||.|    |||..||||    |||||.
BPUM_1188___d   1371 GAATGCCATGAACCGGACAGGGTGGTC----AAACGATACCTATGATCAA   1416

BSNT_02185___   1432 CTGATCAAACAGGCGAAAAATGAAGCCGATGA-------AAAAACACGGT   1474
                     |||||.|||.||||.|...|.|||||.||.||       |.|||||...|
BPUM_1188___d   1417 CTGATTAAAAAGGCAAGTCAGGAAGCAGACGAGCAAAAGAGAAACAACAT   1466

BSNT_02185___   1475 TCTCTCTTATGCATCAAGCTGAAGAG---CTGCTCATCAATGAAGCGCCG   1521
                     |||          |||.|.||.||||   ||.|||||..|.|||||.|||
BPUM_1188___d   1467 TCT----------TCATGATGCAGAGGCACTTCTCATTGAAGAAGCACCG   1506

BSNT_02185___   1522 ATCATCCCGGTTTATTTTTATAATCAGGTTCACCTGCAAAATGAACAAGT   1571
                     |||||||||.||.||||||||||.||.|||||..|.|||||.|||...||
BPUM_1188___d   1507 ATCATCCCGATTCATTTTTATAACCAAGTTCATTTACAAAAAGAAGGCGT   1556

BSNT_02185___   1572 AAAGGGAATTGTCCGTCACCCTGTCGGCTATATCGATTTAAAATGGGC--   1619
                     .|||||.|||||.|||||||||||.||.|||||||||||.||||||||  
BPUM_1188___d   1557 GAAGGGGATTGTTCGTCACCCTGTTGGGTATATCGATTTGAAATGGGCGC   1606

BSNT_02185___   1620 ----AGATAAAAACTGA   1632
                         ||||..|||.|||
BPUM_1188___d   1607 AAGTAGATGGAAAATGA   1623


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