Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02187 and BPUM_1189

See Amino acid alignment / Visit BSNT_02187 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:39
# Commandline: needle
#    -asequence dna-align/BSNT_02187.1.24716.seq
#    -bsequence dna-align/BPUM_1189___ykfA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02187-BPUM_1189___ykfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02187-BPUM_1189___ykfA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02187
# 2: BPUM_1189___ykfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1047
# Identity:     634/1047 (60.6%)
# Similarity:   634/1047 (60.6%)
# Gaps:         210/1047 (20.1%)
# Score: 1762.5
# 
#
#=======================================

BSNT_02187         1 TTGAATTACAAGCCGAAAGC--------GC---TGAAAAAGGGTGATACA     39
                            |..||||   |||        ||   |.|||.|||| ||||||
BPUM_1189___y      1 -------ATGAGCC---AGCTGCCAGTGGCACTTCAAACAGGG-GATACA     39

BSNT_02187        40 GTCGGAGTGATCGCGCCCGCAAGTCCGCCGGATCA------------AAA     77
                     ||.||.||.||.||.||.|||||.|||||.|||.|            |||
BPUM_1189___y     40 GTGGGGGTTATTGCCCCAGCAAGCCCGCCTGATGAGCTGAAATTAGCAAA     89

BSNT_02187        78 AAAGCTTGACACCGCTCTTTTATTTTTAGAAGAG-CTCGGTCTTCAGGTG    126
                     |..|.|||.|            ||||||||| || |||||.||..|||||
BPUM_1189___y     90 AGGGATTGCC------------TTTTTAGAA-AGCCTCGGGCTAAAGGTG    126

BSNT_02187       127 AAGTTGGGCAAGGCGCTGAAAA-------------ACCAGC---ACGGCT    160
                     ||                ||||             |||.||   |.||.|
BPUM_1189___y    127 AA----------------AAAAGGGAAGTATTTGGACCGGCGGTATGGAT    160

BSNT_02187       161 ATTTAGCGGGACAGGATGATGAGCGGCTGGCGGATCTCCATGAGATG-TT    209
                     |||||||.||.||.|||.||||..|..|||..|||||.|||...||| ||
BPUM_1189___y    161 ATTTAGCAGGTCATGATCATGAAAGAGTGGAAGATCTTCATTGCATGTTT    210

BSNT_02187       210 CAGAGA-CGAGGAGGTAAAAGCAGTGTTGTGCGCATGCGGGGGTTTTGGG    258
                     || ||| |.| |||||.|||||.||..|.||.||.|||||.||.|..|||
BPUM_1189___y    211 CA-AGATCCA-GAGGTGAAAGCGGTTATTTGTGCTTGCGGAGGATACGGG    258

BSNT_02187       259 ACAGGACGTATCGCCGCGGGCATTGA-TTTCAGCTTGATCCGCAAACACC    307
                     ||.||..|..|.||.|..|.||||.| |.|.| |.||||.|||....|.|
BPUM_1189___y    259 ACTGGCAGACTTGCGGAAGCCATTAACTATGA-CCTGATTCGCCGGAATC    307

BSNT_02187       308 CTAAAATCTTTTGGGGATACAGCGATATTACGTTTTTACATACTGCCATT    357
                     |.||||||||||||||.||||||||||||||||||||||||||.||.||.
BPUM_1189___y    308 CAAAAATCTTTTGGGGCTACAGCGATATTACGTTTTTACATACGGCGATC    357

BSNT_02187       358 CATCAAAACACAGGTCTTGTCACCTTCCATGGCCCAATGCTCAGCTCGGA    407
                     ||.||..|.|||||||||||.||.||.|||||.|||||||||..|||.||
BPUM_1189___y    358 CAGCAGCAGACAGGTCTTGTGACGTTTCATGGTCCAATGCTCTCCTCTGA    407

BSNT_02187       408 CATTGGCCTTGACGACGTTCACCCGCTGACAAAAGCGTCATA------TA    451
                     ..|.||.|||||.||.||.||.||....||.||||    |||      ||
BPUM_1189___y    408 TGTGGGACTTGAGGAGGTCCATCCTTATACGAAAG----ATACCTTTTTA    453

BSNT_02187       452 AGCAGCTCTTCCAGGAG-ACGGAATTCACCTATACAGAAGAG--------    492
                       |||||.|||     | ||.|||  .||||.|||..|.|.|        
BPUM_1189___y    454 --CAGCTGTTC-----GCACCGAA--AACCTTTACGTATGCGCACCACTT    494

BSNT_02187       493 --------------CTTTC--TCCGCTGACCGCGCTTGTTCCTGGAAAAG    526
                                   |||||  ||||...|||||     |||         
BPUM_1189___y    495 GTCACCCCTTCATACTTTCTATCCGGGCACCGC-----TTC---------    530

BSNT_02187       527 CGGAAGGCGAGCTTGTCGGGGGAAATCTGTCTTTG--CTGA-CGT--CTA    571
                         |||.|||.||||.||.|||||||     |||  ||.| |||  |.|
BPUM_1189___y    531 ----AGGTGAGATTGTAGGAGGAAATC-----TTGCCCTCATCGTCACAA    571

BSNT_02187       572 CACTGGGCACGCCATTTGAAATTGATACGAGAGGAAAGCTTCTGTTTATT    621
                     ||||.||.||.||.||||||||.|||||||..|||||||||.||||.|||
BPUM_1189___y    572 CACTTGGTACACCTTTTGAAATCGATACGAAGGGAAAGCTTTTGTTCATT    621

BSNT_02187       622 GAAGATATTGACGAGGAGCCTTATCAAATCGACCGAATGCTAAATCAGTT    671
                     ||||||||||||||.||.||.|||.||||.||.||||||.|..|.||..|
BPUM_1189___y    622 GAAGATATTGACGAAGAACCCTATAAAATTGATCGAATGATGCAGCACCT    671

BSNT_02187       672 GAAAATGGCGGGGAAGCTGACGGACGCGGCCGGAATTC-TAGTTTGTGAT    720
                     .|.|...||.|||||..||...||.|||||.|| |||| |..||.|.|||
BPUM_1189___y    672 CACATCTGCTGGGAAATTGGATGATGCGGCTGG-ATTCATCATTGGAGAT    720

BSNT_02187       721 TTTCA-CAATTGTGTCCCGGTGAAGCGAGAGAAGTCTCTCTCGCTTG-AG    768
                     ||||| ||| ||||..||....|||..|||..||||.|||.| .||| |.
BPUM_1189___y    721 TTTCATCAA-TGTGAGCCAAAAAAGAAAGATCAGTCCCTCAC-ATTGAAT    768

BSNT_02187       769 CAGGTGCTGGAAGAC-TATATTATTTCTGCGGGC-----AGGCCTGCTCT    812
                     ||.|| .|||.|.|| ||||||.|..|     ||     |.||||||.||
BPUM_1189___y    769 CAAGT-ATGGGACACATATATTGTGCC-----GCAAAAGAAGCCTGCACT    812

BSNT_02187       813 GAGAGGATTTAAAATCGGCCA--CTGCTCGCCAAGTATTGCCGTTCCGAT    860
                     ..|.||.|||...|||||.||  ||.||| |.||.| |||||.||||.||
BPUM_1189___y    813 TGGGGGCTTTCGGATCGGTCATTCTTCTC-CGAACT-TTGCCATTCCAAT    860

BSNT_02187       861 CGGTGCGAAAGCTGCTATGA-AT---ACAGCAGAAAAAACAG--------    898
                     .||..|..|.||||| ||.| ||   ||||.| |||||||.|        
BPUM_1189___y    861 GGGCACACAGGCTGC-ATTAGATGCGACAGGA-AAAAAACTGCACATTTC    908

BSNT_02187       899 TCGTAATAGAGGCGGGCGTTTCAG---AAGGGGCGCTGAAGACATGA    942
                     ||          |.||||||.|||   |||.|||   ||..||||||
BPUM_1189___y    909 TC----------CAGGCGTTGCAGCGAAAGAGGC---GATCACATGA    942


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