Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02193 and BPUM_1193

See Amino acid alignment / Visit BSNT_02193 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:39
# Commandline: needle
#    -asequence dna-align/BSNT_02193.1.24716.seq
#    -bsequence dna-align/BPUM_1193.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02193-BPUM_1193.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02193-BPUM_1193.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02193
# 2: BPUM_1193
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 953
# Identity:     300/953 (31.5%)
# Similarity:   300/953 (31.5%)
# Gaps:         550/953 (57.7%)
# Score: 673.5
# 
#
#=======================================

BSNT_02193         0 --------------------------------------------------      0
                                                                       
BPUM_1193          1 ATGGATTCTATAAGAGCAGAACAAATACACAAAATGCCGCAATGTATGAG     50

BSNT_02193         0 --------------------------------------------------      0
                                                                       
BPUM_1193         51 TGAATATGACAATTTACAAGAAGTCCTTTTATGCAGCCCCATCTATATGG    100

BSNT_02193         0 --------------------------------------------------      0
                                                                       
BPUM_1193        101 AAATCAAACAGATCATCAACGAAACCCAAAAACATTTTGCAAGAGAAAAT    150

BSNT_02193         0 --------------------------------------------------      0
                                                                       
BPUM_1193        151 ATTTCTCAAATGAAAGCCATTGCTCAGCATAAGCAATTGATCCAAATCCT    200

BSNT_02193         0 --------------------------------------------------      0
                                                                       
BPUM_1193        201 AAAAAACCATCAAGTACGTCCCATTATGCTTCCTGCAAATGACCGCTATC    250

BSNT_02193         0 --------------------------------------------------      0
                                                                       
BPUM_1193        251 CTGAGCAAGTCTTTACTCGGGATATTGGGTTTACGATTGGACATACACTC    300

BSNT_02193         0 --------------------------------------------------      0
                                                                       
BPUM_1193        301 TTTGTTTCAAGCATGGCTGCTCCGGTTCGGCAAGGAGAAGAACAATTATT    350

BSNT_02193         1 --------------------AT-GCTT-----------------------      6
                                         || ||||                       
BPUM_1193        351 AAAAGAGTGGGCACAGGAAAATGGCTTCAAAACTGTTAGCCTGACAAACG    400

BSNT_02193         7 GATACGAGTATTGAAGGCGGAGACGTCATTATCGATGATGACA-TTGTCT     55
                     || |||   |||||||||||.||.||..||.|.||..| .||| .|||.|
BPUM_1193        401 GA-ACG---ATTGAAGGCGGCGATGTACTTGTAGACCA-AACACGTGTAT    445

BSNT_02193        56 ATGTCGGAATCAG-------------CCAGCGCACCGTCATTTCAGCTAT     92
                     .|||||||||.||             ||||             |.|||||
BPUM_1193        446 TTGTCGGAATGAGCAAAAGAACAAACCCAG-------------CCGCTAT    482

BSNT_02193        93 CGGCCAGCTGGAAGAGGCACTTCCTGAGTAT-ACGATCGTTCCAGTGAAG    141
                     |....||||..||.|.|.|||.||.||..|| || ||..||||..|..|.
BPUM_1193        483 CCATGAGCTCAAAAAAGAACTGCCGGATCATGAC-ATTATTCCCATTCAT    531

BSNT_02193       142 CTGCATGAAAAATTTTTGCATTTGGACTGCGTATTTAACATTGTATCTGA    191
                     ||.|.|....|..|||||||..|.||.||.||..|.||.|||.|.|||.|
BPUM_1193        532 CTTCCTCCTCACATTTTGCACCTCGATTGTGTGATGAATATTCTCTCTCA    581

BSNT_02193       192 --AAGCGAAGCGTTAATTTATCCACAGGCCATT-------GAGCCAGATG    232
                       |.|.||  .|||.||||||||..|.| |.||       |||       
BPUM_1193        582 TGATGAGA--TGTTGATTTATCCTGAAG-CGTTCAAAAAAGAG-------    621

BSNT_02193       233 CAGCCGAT------ATGCTGGCAAAA--CGTTATGATCTTATTG----AG    270
                          |||      .||||  |||.|  |.||||.||||.||||    |.
BPUM_1193        622 -----GATCTTCACTTGCT--CAACATGCATTATCATCTCATTGAAATAA    664

BSNT_02193       271 GTGCCCGAGGACGAACAATTTACGCTTGGCACC-AACGTCCTTTCAATC-    318
                     ||    ||..|.||.|||||.||.||.|| ||| |||||  |||  ||| 
BPUM_1193        665 GT----GAACAAGAGCAATTCACACTCGG-ACCTAACGT--TTT--ATCT    705

BSNT_02193       319 ----GAAAAAAAAACGATCATCAGTCTCCCTGGCAACCGCCATGTCAATC    364
                         ||.|.|||||.| |.||||||.|.|          |||  ||||||
BPUM_1193        706 ATTGGACAGAAAAAAG-TGATCAGTTTGC----------CCA--TCAATC    742

BSNT_02193       365 AACAGCTATCGAAA-AGAGGCT----------ATCAC---------ATTA    394
                     ||        |||| |.|.|||          .||||         .|.|
BPUM_1193        743 AA--------GAAACAAATGCTGCATTAACCGCTCACGGGTATACTGTCA    784

BSNT_02193       395 TCGAAATTGACCTGTCAGAAATTATTAAATCAGGCGGCTCCTTCAGGTGC    444
                     |.|||.|.||..|.||||||||.||||||||.||.||.||.||.||.|||
BPUM_1193        785 TTGAAGTGGATTTTTCAGAAATCATTAAATCTGGTGGGTCTTTTAGATGC    834

BSNT_02193       445 TGCACAATGCCGCTGATTCGAGGCG-------AATGA-------------    474
                     ||||||.|.||   |||||  ||||       |.|.|             
BPUM_1193        835 TGCACATTACC---GATTC--GGCGTTCATCCACTAAAAAAGCCAGCGTG    879

BSNT_02193       474 ---    474
                        
BPUM_1193        880 TAG    882


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