Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02195 and BPUM_1194

See Amino acid alignment / Visit BSNT_02195 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:39
# Commandline: needle
#    -asequence dna-align/BSNT_02195___ykhA.1.24716.seq
#    -bsequence dna-align/BPUM_1194.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02195___ykhA-BPUM_1194.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02195___ykhA-BPUM_1194.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02195___ykhA
# 2: BPUM_1194
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 532
# Identity:     392/532 (73.7%)
# Similarity:   392/532 (73.7%)
# Gaps:          20/532 ( 3.8%)
# Score: 1424.0
# 
#
#=======================================

BSNT_02195___      1 ---ATG---GAAACACCGGAAA----CAAGATTTTGTAAAGAGTCAAAGG     40
                        |||   |||      ||||    ||| ||..||.||.||.|||||.|
BPUM_1194          1 ATGATGAGTGAA------GAAAATTTCAA-ATACTGCAAGGAATCAAAAG     43

BSNT_02195___     41 TTGTGAAAACCAGCAGGGTGTTCCCGCTTGACACGAACAACCATAATACG     90
                     ||||.||||||||||||||.||.||.||.||.|||||.||.||..|.||.
BPUM_1194         44 TTGTTAAAACCAGCAGGGTATTTCCTCTCGATACGAATAATCACCAAACC     93

BSNT_02195___     91 CTGTTTGGCGGAAAATTAATGAGCTACATCGATGACATTGCCTCTATTTC    140
                     .|.||||||||||||||||||||.||.||.||||||||||||||.||.||
BPUM_1194         94 TTATTTGGCGGAAAATTAATGAGTTATATAGATGACATTGCCTCCATCTC    143

BSNT_02195___    141 CGCGGCGCGCCATTGCAGACGTGAAACCGTAACGGCTTCAATGGATTCTG    190
                     .||.||..|.||..||.|..|||||||.||.||||||||.||||||||||
BPUM_1194        144 GGCAGCAAGGCACAGCCGTAGTGAAACGGTTACGGCTTCGATGGATTCTG    193

BSNT_02195___    191 TAGATTTTTTAAAGCCGATCGGGCAAAAGGATTCTGTCTGCCTAGAGTCC    240
                     |.||.||||||.|||||||.||.|||||.||.||.||.|||.|.||.|||
BPUM_1194        194 TTGACTTTTTAGAGCCGATTGGACAAAAAGAGTCAGTATGCTTGGAATCC    243

BSNT_02195___    241 TATGTGACATGGGTCGGCACATCTTCTATGGAAGTATTTGTGAAAGTCAT    290
                     ||||||||||||||.|||||.|||||.||||||||.||.||.||||||||
BPUM_1194        244 TATGTGACATGGGTTGGCACGTCTTCCATGGAAGTGTTCGTTAAAGTCAT    293

BSNT_02195___    291 TAAGGAGCATTTGATGACTGGCGAACGGGAACTCGCTGCCACATCCTTTT    340
                     .||.||..|.||||||.||||.|||||...|||.||.|||||.||.|||.
BPUM_1194        294 GAAAGAAAACTTGATGTCTGGAGAACGCAGACTTGCAGCCACTTCATTTC    343

BSNT_02195___    341 TGACATTTGTCGCATTAGATTCAAATGGCAAGCCGGTGCCTGTACCGAGG    390
                     |||||||||||.|.||||||..|.|.||.||.||....|..||.|||..|
BPUM_1194        344 TGACATTTGTCTCGTTAGATGAAGACGGAAAACCTAAACGAGTTCCGCAG    393

BSNT_02195___    391 GTTGTACCGGAAACAGAAGAAGAAATCATGCTTCATAATACAGCAGTACA    440
                     ||..|.||.||||||||.||||||||||||||.|||.|.||||||..|||
BPUM_1194        394 GTGATGCCTGAAACAGAGGAAGAAATCATGCTGCATCAAACAGCAAAACA    443

BSNT_02195___    441 GCGCGCTAATGAACGAAAGAACCGCAAGAAGCACAGCCAGGCGCTTGCAA    490
                     |||.|||.|.|||.||||.|.||||...|||||.|||.|||||||.||..
BPUM_1194        444 GCGAGCTGAAGAAAGAAAAAGCCGCCGAAAGCATAGCAAGGCGCTAGCTG    493

BSNT_02195___    491 ATGCGCTCGGAACTGATAAGCCTTG---GTGA    519
                     |.||.||.||.||.|||||.||.||   ||.|
BPUM_1194        494 ACGCACTTGGGACAGATAAACCATGGGCGTAA    525


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