Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02200 and BPUM_1199

See Amino acid alignment / Visit BSNT_02200 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:40
# Commandline: needle
#    -asequence dna-align/BSNT_02200___ykkB.1.24716.seq
#    -bsequence dna-align/BPUM_1199.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02200___ykkB-BPUM_1199.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02200___ykkB-BPUM_1199.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02200___ykkB
# 2: BPUM_1199
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 600
# Identity:     331/600 (55.2%)
# Similarity:   331/600 (55.2%)
# Gaps:         135/600 (22.5%)
# Score: 778.0
# 
#
#=======================================

BSNT_02200___      1 ATG--------AACGC----------TAAAACGAAGC--------TTGTG     24
                     |||        |||.|          ||||||..|||        .||.|
BPUM_1199          1 ATGCAACATCAAACACGGACGGTGCTTAAAACAGAGCGGCTCAGGCTGAG     50

BSNT_02200___     25 ACCGATCGAATTCGTTTGCGCTGTATGGAAGATCGGGATCAAGCCAC---     71
                     |.|||| ||||                |||.||   |||   |||.|   
BPUM_1199         51 AACGAT-GAAT----------------GAACAT---GAT---GCCCCATT     77

BSNT_02200___     72 TTTGTTTGGGCTGCTTTTTAATGATCCTGACGTCATGACATATTATTCCG    121
                     |||.|.|....||.|.|||.|.|||...||.||.||||.|||||||.|..
BPUM_1199         78 TTTATATCACATGTTGTTTCAAGATGAAGAAGTGATGAAATATTATCCTT    127

BSNT_02200___    122 GTTTAAAAGATAAGAGGCAAACCCGCGAGTGGGT--CAATTGGAACCAAC    169
                     .|||.||.|||.||..||||||....||||||.|  ||  |||||.|||.
BPUM_1199        128 CTTTGAAGGATGAGCAGCAAACGAAAGAGTGGATTGCA--TGGAATCAAA    175

BSNT_02200___    170 GAAATGAAAAAGGGTACGGCGT---------TAGTCTGTGGATCGCCGAA    210
                     ..||||         ||.||||         |..|||.||||||...|||
BPUM_1199        176 AGAATG---------ACCGCGTGTATCATACTTCTCTCTGGATCATTGAA    216

BSNT_02200___    211 G----ATAAGCGGA-----CAGGGGAGTTTTTGGGGCAATGCGGCACTGT    251
                     |    |.||.||.|     ||         ||.||.|||.||||.|.|||
BPUM_1199        217 GACAAAGAAACGAATGAACCA---------TTTGGACAAAGCGGGATTGT    257

BSNT_02200___    252 TCCCCAGCAGATCGAAAATCAAACCGTAATGGAAATTGGCTATATGTTT-    300
                     |...||..|.||||||...|||||||.|.|.|||||.|||||||||.|| 
BPUM_1199        258 TTTGCAAAACATCGAAGGACAAACCGAACTTGAAATCGGCTATATGCTTA    307

BSNT_02200___    301 -GCCCGCCGCCACTGGGGGAACGGCTATGC-GCAAGAAGCGGCTCGGGCC    348
                      |...||.||  .||||||||.|||||||| || .|||||.||...||.|
BPUM_1199        308 AGAAAGCAGC--GTGGGGGAATGGCTATGCTGC-TGAAGCCGCAAAGGGC    354

BSNT_02200___    349 TGTCTGGACTATGGCTTTAACGAGCGGCAGTTCGGCAAAATGGCG-GCTT    397
                     |||||...|||.||||||.|.||...|.||.||.|...|||||.| || |
BPUM_1199        355 TGTCTCACCTACGGCTTTGAAGAAATGAAGGTCAGACGAATGGTGAGC-T    403

BSNT_02200___    398 TGATTGATCCGGGTAACAAAGCGTCCATACGGGTAGCGGAGAAAATCGGT    447
                     |.|||...||||.|||..|.||.||..||..|||.||....|||||.||.
BPUM_1199        404 TAATTCGCCCGGATAATGAGGCATCGGTAAAGGTCGCTTTAAAAATGGGC    453

BSNT_02200___    448 ATGCATCACAGCGAAACGACCA---GAAAAT-GGAATAAACCGATCGCGG    493
                     |||   .|.|..||||..||||   .||||| |||..|||.| ||.|..|
BPUM_1199        454 ATG---AAAAAAGAAAAAACCATTTCAAAATGGGACCAAATC-ATTGATG    499

BSNT_02200___    494 TA-----TATGA---------AAGAAAA------TCTTACAATTGA----    519
                     ||     |||.|         |||||||      .|||||||   |    
BPUM_1199        500 TATACAGTATCAATCGCAACGAAGAAAACGGCTCGCTTACAA---AATAA    546


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