Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02201 and BPUM_1202

See Amino acid alignment / Visit BSNT_02201 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:40
# Commandline: needle
#    -asequence dna-align/BSNT_02201___ykkC.1.24716.seq
#    -bsequence dna-align/BPUM_1202.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02201___ykkC-BPUM_1202.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02201___ykkC-BPUM_1202.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02201___ykkC
# 2: BPUM_1202
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 359
# Identity:     224/359 (62.4%)
# Similarity:   224/359 (62.4%)
# Gaps:          49/359 (13.6%)
# Score: 593.0
# 
#
#=======================================

BSNT_02201___      1 ATGAAATGGGGATTGGTCGTGCTTGCCGCTGTTTTCGAGGTTGTTTGGGT     50
                     ||||||||||||...|||.|..||||.||..|.||.||.||.|..|||||
BPUM_1202          1 ATGAAATGGGGAAATGTCTTTATTGCGGCCATCTTTGAAGTCGGCTGGGT     50

BSNT_02201___     51 GAT-AGGCTTAAAGCACGCTGACTCAGC-CTTAACATGGAGCGGCACTGC     98
                     ||| .||||.||| .|.||..|||| || |.||..||||   |||.|..|
BPUM_1202         51 GATGGGGCTGAAA-TATGCCAACTC-GCTCATAGAATGG---GGCGCAAC     95

BSNT_02201___     99 CATCG---GCATCATATTCAGTTTTTATCTTCTAATAAAGGCGACTCACA    145
                     |||||   |.||.||..|.||.||||||.|.||.||.||.||.||   .|
BPUM_1202         96 CATCGTTTGTATTATCGTGAGCTTTTATTTACTCATGAAAGCAAC---AA    142

BSNT_02201___    146 GT---CTGCCTGTTGGTACCGTGTATGCCGTCTTTAGCGGGCTCGGCACA    192
                     ||   |||||.||.||.||..|.|||||.||.||||.|||.||.||.|||
BPUM_1202        143 GTGTACTGCCAGTCGGCACACTTTATGCTGTTTTTACCGGTCTTGGGACA    192

BSNT_02201___    193 GCGGGAACAGTACTTAGTGAAATCGTTCTGTTTCATGAACCGGTT-GGAT    241
                     ||.||.||.||..|.|..|..||.|   ||.||..|||.|||||| .|.|
BPUM_1202        193 GCAGGTACCGTCGTCATAGGCATGG---TGCTTGGTGAGCCGGTTCAGCT    239

BSNT_02201___    242 GGCCGAA--GCTATTGTTAATTGGCGTGCTCTTAATCGGTGTAATCGGGT    289
                     .|.|.||  |||.|||   ||||.|.||||.||...|||||||.|.||..
BPUM_1202        240 TGTCAAACTGCTTTTG---ATTGTCATGCTTTTGTGCGGTGTATTAGGAC    286

BSNT_02201___    290 TGAAGCTTGTGAC-ACAGGATGAGACAGAGGAAAAAGGA--GGCGAGGCA    336
                     ||||||   |||| ||||||          |||||  ||  ||.|||||.
BPUM_1202        287 TGAAGC---TGACAACAGGA----------GAAAA--GAAGGGAGAGGCT    321

BSNT_02201___    337 TAA------    339
                     .||      
BPUM_1202        322 GAATCATGA    330


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