Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02205 and BPUM_1207
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:40
# Commandline: needle
# -asequence dna-align/BSNT_02205___proB.1.24716.seq
# -bsequence dna-align/BPUM_1207___proB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02205___proB-BPUM_1207___proB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02205___proB-BPUM_1207___proB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02205___proB
# 2: BPUM_1207___proB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1156
# Identity: 775/1156 (67.0%)
# Similarity: 775/1156 (67.0%)
# Gaps: 116/1156 (10.0%)
# Score: 2377.5
#
#
#=======================================
BSNT_02205___ 1 ATGAAAAAACAAAGAATAGTAGTGAAAATAGGAAGCAGTTCGCTCACAAA 50
||||||||.|||||.||.||..|.|||||.||.||.|||||..|.|| |
BPUM_1207___p 1 ATGAAAAAGCAAAGGATCGTCATCAAAATTGGCAGTAGTTCATTGAC--A 48
BSNT_02205___ 51 TAGC--AAAGGAAGCATTGATGAGGCAAAAAT-CAGAGAGCATGTTCAG- 96
.||| ||||||..|||||||||...|||||| || |||.|||| |.||
BPUM_1207___p 49 GAGCAAAAAGGAGCCATTGATGAACAAAAAATGCA-AGATCATG-TGAGA 96
BSNT_02205___ 97 GCCATTTCCGTGTTAAAAAAAGCGGGGCATGAAATGATTCTGATTACCTC 146
||.||..|...|.|.|||.|.||.||.||||||||.|||.|.|||.|.||
BPUM_1207___p 97 GCGATAGCAAAGCTGAAAGAGGCTGGACATGAAATCATTTTAATTTCATC 146
BSNT_02205___ 147 GGGTGCCGTAGCGGCGGGGTTTTCCAGCCTCGGTTATCCGTCCCGTCCCG 196
.||.|||||.||.||.||||||..||||.|.||.||.||.||..|.||.|
BPUM_1207___p 147 AGGAGCCGTCGCAGCAGGGTTTGGCAGCTTAGGGTACCCATCAAGACCTG 196
BSNT_02205___ 197 TTACCATCAAAGGAAAACAGGCGGCGGCCGCGGTCGGACAAACACTGTTA 246
|.|||.|.||.|||||||||||.||.|||||.||.||.||.....|||||
BPUM_1207___p 197 TGACCTTAAAGGGAAAACAGGCAGCCGCCGCCGTTGGTCAGGGCTTGTTA 246
BSNT_02205___ 247 ATGCAGCAATATA-TGAATCAATTTAAACAATACTCAC-TGACTCCGGGA 294
||||||.|||||| .||| |.||||..|||.|.| ||| ||||.||.|..
BPUM_1207___p 247 ATGCAGAAATATACAGAA-CTATTTTCACAGTTC-CACATGACACCTGCT 294
BSNT_02205___ 295 CAAATCCTTTTAACGAGAAATGATTTTTCGAAAAGA--GAAC--GGTATC 340
|||||.||||||||..|.|||||.||||| ||| |.|| |.||||
BPUM_1207___p 295 CAAATGCTTTTAACCCGTAATGACTTTTC----AGATCGTACAAGATATC 340
BSNT_02205___ 341 GAAACGCGTATGCTACGATAATGGAATTATTAGAGCGGGGCGTCA----- 385
|.||.||.||.||.|||||.|||||..||.|.||..| |
BPUM_1207___p 341 GCAATGCTTACGCAACGATGATGGAGCTACTGGAAAG-------AAAAAT 383
BSNT_02205___ 386 --TTCCGATTATCAACGAGAACGATTCTACATCTGTTGAAGAATTGACAT 433
|.||||||||.||.||.||.||||||...|||.||||.||..|.||.|
BPUM_1207___p 384 TTTACCGATTATTAATGAAAATGATTCTGTTTCTATTGAGGAGCTTACCT 433
BSNT_02205___ 434 TCGGAGATAATGATATGCTTTCTGCGTTAGTCAGCGGATTGATTCACGCG 483
|.||.||||||||||||||.||.||..|.||||||||.||.|||||.||.
BPUM_1207___p 434 TTGGTGATAATGATATGCTGTCAGCTCTTGTCAGCGGTTTAATTCATGCA 483
BSNT_02205___ 484 GACCAGCTCATGATTCTCACCGACATTAACGGACTGTATGATGCCAATCC 533
||.||..|.||.||..|.||.||||||||||||.|.|||.||||.|||||
BPUM_1207___p 484 GATCAATTGATCATCTTAACAGACATTAACGGAATTTATAATGCAAATCC 533
BSNT_02205___ 534 AAATGAAAATCCTGAGGCGAAACGATTTGAT-----------TATTTGCC 572
||||||..|||||||.||.||.||.|||||| .||||
BPUM_1207___p 534 AAATGAGCATCCTGACGCAAAGCGTTTTGATGTCCTAACACACATTT--- 580
BSNT_02205___ 573 GGAGATCACGCCTGAATTGCTTGGATATGC-AGGTTCAGCCGGATCAAAG 621
.||| .||||||.||..|||||| |.|..|| |.||.|||||.
BPUM_1207___p 581 -CAGA-------AGAATTGTTTTCATATGCGAAGAGCA-CAGGCTCAAAA 621
BSNT_02205___ 622 GTCGGCACCGGCGGAATGAAATCAAAGCTGTTAGCCGCACAAACCGCGCT 671
||.||.||.|||||.||||||||||||||||..||.||||||||.||.||
BPUM_1207___p 622 GTGGGGACAGGCGGGATGAAATCAAAGCTGTCTGCTGCACAAACGGCACT 671
BSNT_02205___ 672 GTCTCTGGGAGTGAAAGTATTCATTGGAACAGGCAGCGGAGAGCAAAAAC 721
.||.||.||.||||||||.||||||||.|||||.|..||.|||.|.||.|
BPUM_1207___p 672 TTCACTAGGCGTGAAAGTCTTCATTGGTACAGGTACTGGTGAGGATAAGC 721
BSNT_02205___ 722 T--TGCGGATATTTTGGACGGCAGG----GGAGACGGCACTTATATCGGA 765
| |.| |||||.| .||||| ||||||||.||.|||||||||
BPUM_1207___p 722 TGCTTC--ATATTCT----AGCAGGTCAAGGAGACGGAACGTATATCGGA 765
BSNT_02205___ 766 GACAAAGAAC-TATCTTCGGTTAACAACACAAGGCAGTGGATTCAGTTCC 814
|| |.||.|| ||||..|.|||||||||....|.||.||||||||.||||
BPUM_1207___p 766 GA-ACAGGACTTATCAGCTGTTAACAACCGCCGTCAATGGATTCAATTCC 814
BSNT_02205___ 815 ACTCGCCGATATC-GGGAGAAATTATCATTGATGCGGGTGCCGAGGAGGC 863
|.||.||..|.|| |||| ||||.||.||.|||||.||.||.||.|..||
BPUM_1207___p 815 ATTCACCCGTTTCTGGGA-AAATCATGATAGATGCAGGAGCAGAAGCAGC 863
BSNT_02205___ 864 GATGATCCATAATGGAAGCAGCCTTTTGCCCGCTGGCGT------TGTGG 907
|||..|.|||.||||.||.||.|||.|.||.|||||.|| |||.|
BPUM_1207___p 864 GATTTTGCATCATGGCAGAAGTCTTCTTCCAGCTGGTGTCATTGATGTCG 913
BSNT_02205___ 908 GT-GTGAACGGAAGCTTTCCGAAAGGGGCGGTTGTGGAAGTCAGGGGACC 956
.| |||| ||||.|.|||||.|.|||.||.||||||...||.||
BPUM_1207___p 914 CTGGTGA-------CTTTTCTAAAGGAGAGGTCGTTGAAGTCGTCGGTCC 956
BSNT_02205___ 957 GGGCGGCGTGATCGGCAAAGGCCAAACCCATTACTCCTCTGAGGA----- 1001
...|||..|..|.||.|||||.||||||...|||.|.||.||.||
BPUM_1207___p 957 AAACGGACTAGTAGGTAAAGGACAAACCTTGTACGCATCCGATGAACTTC 1006
BSNT_02205___ 1002 ----GATTATGGAGGCCAAGGGCAAACGCAGTGACGAACTTGATTTTGA- 1046
.|||| ||||.| ..||.|||||.||.|| ||.|.|
BPUM_1207___p 1007 ACGGTATTA--------AAGGAC-TGCGAAGTGATGAGCT---TTCTAAT 1044
BSNT_02205___ 1047 GAAAACGTTTGAGGTTATTCATAGGAATGACTGGGT-CA--ATGTAAAAG 1093
||||| |..|||.|||||.||.||..||.||||||| || |||||.||.
BPUM_1207___p 1045 GAAAA-GCCTGAAGTTATACACAGAGATCACTGGGTACAGCATGTACAAA 1093
BSNT_02205___ 1094 ACTAG- 1098
||| |
BPUM_1207___p 1094 ACT-GA 1098
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