Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02206 and BPUM_1208

See Amino acid alignment / Visit BSNT_02206 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:40
# Commandline: needle
#    -asequence dna-align/BSNT_02206___proA.1.24716.seq
#    -bsequence dna-align/BPUM_1208___proA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02206___proA-BPUM_1208___proA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02206___proA-BPUM_1208___proA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02206___proA
# 2: BPUM_1208___proA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1338
# Identity:     863/1338 (64.5%)
# Similarity:   863/1338 (64.5%)
# Gaps:         177/1338 (13.2%)
# Score: 2607.5
# 
#
#=======================================

BSNT_02206___      1 ATGAGTGAAGTTTCTGTAAAAGC----GAAGC-----TTGCGAAAGAAGC     41
                     ||||..||||||..||.||||||    .||||     |.||.||||    
BPUM_1208___p      1 ATGAACGAAGTTCTTGAAAAAGCAAAAAAAGCAAGTATAGCCAAAG----     46

BSNT_02206___     42 AGCAGCCGAAATGATCATGAAAACAAC--AGCCGAGAAGGATGAGGCGCT     89
                     |.||||     ||.||.|.||||||||  |||  |.||..|||       
BPUM_1208___p     47 ATCAGC-----TGCTCCTAAAAACAACGGAGC--AAAAAAATG-------     82

BSNT_02206___     90 CAGCCT-------CATTGCAAACGGACTCCGCAAAG-------AACTGGA    125
                     ||||.|       ||||||||..|.|||   .||||       .||| .|
BPUM_1208___p     83 CAGCTTTACATGCCATTGCAACTGCACT---TAAAGCATCTTCCACT-TA    128

BSNT_02206___    126 TTTTCTCTTGGCGGAGAATGCAAAA--GACATTGTG--------AACGGA    165
                     |||..||   |..|||||  |||||  ||   ||||        |..|||
BPUM_1208___p    129 TTTAATC---GATGAGAA--CAAAAAGGA---TGTGCAAGCTGCAGAGGA    170

BSNT_02206___    166 AAAG-AGAATGGTTTAACACCGGACATC----ATTGACCGTCTCACATT-    209
                     |||| ||          |.|..|.|.||    ||||||||..|.|||.| 
BPUM_1208___p    171 AAAGCAG----------CTCACGCCTTCTGTTATTGACCGGATTACACTT    210

BSNT_02206___    210 --GGATGAGAAACGTAT--ACGCGATATCGCGGACGCG---GTGGAGCTC    252
                       .||.||||   |.||  |.||  .|||||.||||||   .|..|.|||
BPUM_1208___p    211 ACAGAAGAGA---GAATTGAAGC--CATCGCAGACGCGACCCTTCAACTC    255

BSNT_02206___    253 TTAATCGACTTAGCGGACCCAATCGGCGACTCTCTTGAAACGATTGAAAA    302
                        ||..||.||...||||||||.||.||..|..|.|||||.|||.||||
BPUM_1208___p    256 ---ATTCACCTAAAAGACCCAATTGGTGAAACATTAGAAACCATTCAAAA    302

BSNT_02206___    303 AGAAAACGGCCTGTTTATTGAAAAAATCCGTGTGCCGCTCGGTGTCGTAG    352
                     |||||||||.||||..||.||||||.|.||||||||.||.||....||.|
BPUM_1208___p    303 AGAAAACGGTCTGTACATCGAAAAAGTACGTGTGCCTCTTGGAACGGTTG    352

BSNT_02206___    353 GAATGATTTATGAGGCGAGGCCAAACGTCACAGTTGATGCGGCTACCCTT    402
                     |||||||||||||.||.||.||||||||.||.||.|||||.||.||||||
BPUM_1208___p    353 GAATGATTTATGAAGCAAGACCAAACGTGACCGTAGATGCTGCCACCCTT    402

BSNT_02206___    403 TGCCTGAAGACAGGGAACGCGGTTGTGCTGCGGGGAAGCTCCTCAGCCAT    452
                     ||..||||.||.|||||.||.|||.|.||.||.||.|||||.||.||.||
BPUM_1208___p    403 TGTTTGAAAACTGGGAATGCTGTTATTCTTCGCGGGAGCTCTTCTGCTAT    452

BSNT_02206___    453 CCACAGCAACAAAGCGCTCGTCAGTGTCATTCACAGAGCACTTGAGCA-A    501
                     .||.||.||.||||||.|.||.|..||.||.||...|||.|||.| || |
BPUM_1208___p    453 TCATAGTAATAAAGCGATTGTGAAAGTGATCCATGAAGCGCTTCA-CACA    501

BSNT_02206___    502 TCAGCGCTTCCGATTCACGCTGTGCAGCTGATTGAGGATACGAGCAGAGA    551
                     .|||...||||..|..||..||||||..|.|||||.|||||..|..|.||
BPUM_1208___p    502 ACAGATATTCCAGTAGACAGTGTGCAATTAATTGAAGATACAGGTCGTGA    551

BSNT_02206___    552 GACAGCAAAAGAGCTCTTTACGTTAAATGATGGTTTAGACGTATTGATTC    601
                     .||.||.|||..|||.||.||.||||||||...|.|.||.||..|.||||
BPUM_1208___p    552 AACGGCGAAAACGCTGTTCACTTTAAATGAATATCTGGATGTCCTCATTC    601

BSNT_02206___    602 CGCGCGGAGGCAAGAAACTGATTGATCTCGTTGTGAGAGAATCAACAGTT    651
                     |||||||.||.||.||..|.||||||||.||.||||||||.||.||.||.
BPUM_1208___p    602 CGCGCGGTGGGAAAAATTTAATTGATCTTGTCGTGAGAGAGTCTACCGTG    651

BSNT_02206___    652 CCTGTATTAGAAACGGGAGCAGGAAACTGCCACATATTCATTGACGAAAC    701
                     ||.||..|.||.||.||.|||||.|||||.||.||.|.||||||.|||||
BPUM_1208___p    652 CCAGTGCTTGAGACAGGTGCAGGGAACTGTCATATCTACATTGATGAAAC    701

BSNT_02206___    702 AGCCAAACCTCAAATGGCAGAAAAGGTTGTCGTAAATGCCAAAACTCAGC    751
                     |||.|||....|||||||.||..||.||||..|.|||||.|||||.||..
BPUM_1208___p    702 AGCGAAATACGAAATGGCTGAGCAGATTGTGCTGAATGCTAAAACCCAAA    751

BSNT_02206___    752 GCCCTTCTGTATGCAACGCGATTG-AATCATTGCTGATTCACAAGGCTTG    800
                     |.||.|||||.||||||||.||.| ||.||||| |.|||||..|..|.||
BPUM_1208___p    752 GGCCATCTGTTTGCAACGCAATCGAAAGCATTG-TCATTCATGAAACATG    800

BSNT_02206___    801 GGCAAGACAGCACGGGAAAGA-ATTGC----------TGGACCAGC----    835
                     |||||           |||.| ||.||          |.||  |||    
BPUM_1208___p    801 GGCAA-----------AAACATATGGCGCTTCGTTATTTGA--AGCCCTT    837

BSNT_02206___    836 --TGGAAAACGCGGGAGTTGAAATTCGGGGTGATGAATTGGTATGTGAAC    883
                       ||.|||    .||.||.||.||.|||||.||||||...|||||||..|
BPUM_1208___p    838 CATGCAAA----TGGGGTAGAGATACGGGGCGATGAAGCTGTATGTGCCC    883

BSNT_02206___    884 T------TCATCCTTCA--AGCAAACAAGCATCAAAAGAAGATTGGGAAA    925
                     |      |..|.|||||  |||.|        |.|.||||||.|..||||
BPUM_1208___p    884 TTGCGCCTAGTGCTTCATTAGCTA--------CTACAGAAGACTATGAAA    925

BSNT_02206___    926 CCGAATTCTTAGCGCCTGTCCTCAGCGTAAAAACGGTTGAAAACGTCCAA    975
                     |.||.||.|||||.||..|..||||..|.||||..||.||.|||.|..||
BPUM_1208___p    926 CAGAGTTTTTAGCACCGATTGTCAGTATTAAAATCGTAGATAACATAGAA    975

BSNT_02206___    976 GAAGCTGTGAAGCATATCCAACAATACG----GCACCAATCATTCTGAAG   1021
                     |||||..|..|||||||.|||    |||    ||.||||.||.||.||||
BPUM_1208___p    976 GAAGCGATACAGCATATTCAA----ACGTATAGCTCCAAGCACTCCGAAG   1021

BSNT_02206___   1022 CGATTTTAACTGAAAATGACAAAAACGCAGCATATTTTC-AAACGGCTGT   1070
                     ||||..|.||.||||||||..|||||||..|| .||||| .|||.|||||
BPUM_1208___p   1022 CGATCATTACGGAAAATGATCAAAACGCGTCA-CTTTTCTTAACAGCTGT   1070

BSNT_02206___   1071 CGATGCTGCCGCTGTCTATCATAACGCGTCAACCCGCTTTACCGACGGCT   1120
                     |||||||||.||||||||||||||.||.||.||.||.||.||.||.||||
BPUM_1208___p   1071 CGATGCTGCTGCTGTCTATCATAATGCCTCTACTCGGTTCACAGATGGCT   1120

BSNT_02206___   1121 TTGAATTCGGCTACGGAGCCGAAATCGGCATCAGCACGCAAAAGCTTCAT   1170
                     |||||||.|||||||||||.|||||.||.||.|||||.|||||.||.|||
BPUM_1208___p   1121 TTGAATTTGGCTACGGAGCAGAAATAGGAATTAGCACACAAAAACTGCAT   1170

BSNT_02206___   1171 GCAAGAGGACCGATGGGGCTTCCTGCACTGACTTCTACAAAATACATCAT   1220
                     |||||||||||.|||||.||.|||||..|.||.|||..|||.|...||||
BPUM_1208___p   1171 GCAAGAGGACCTATGGGTCTACCTGCCTTAACCTCTGAAAAGTTTGTCAT   1220

BSNT_02206___   1221 ------TAAAGGAACTGGGCAAATCCGTGAAT----AG   1248
                           |.|||||      |||||..|.||||    | 
BPUM_1208___p   1221 TCGCGGTCAAGGA------CAAATAAGAGAATCATGA-   1251


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