Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02212 and BPUM_1213

See Amino acid alignment / Visit BSNT_02212 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:40
# Commandline: needle
#    -asequence dna-align/BSNT_02212___ykzA.1.24716.seq
#    -bsequence dna-align/BPUM_1213___ohrB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02212___ykzA-BPUM_1213___ohrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02212___ykzA-BPUM_1213___ohrB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02212___ykzA
# 2: BPUM_1213___ohrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 430
# Identity:     300/430 (69.8%)
# Similarity:   300/430 (69.8%)
# Gaps:          32/430 ( 7.4%)
# Score: 1006.5
# 
#
#=======================================

BSNT_02212___      1 ATG---GCACTATTTACAGCAAAAGTAACCGCGCGAGGC-------GGAC     40
                     |||   .||.||||.|||||||||||||       ||||       |||.
BPUM_1213___o      1 ATGAAACCATTATTCACAGCAAAAGTAA-------AGGCACAACATGGAA     43

BSNT_02212___     41 GGGCAGGACATATTAC-ATCAGATGACGGTGTTCTTGATTTTGATATTGT     89
                     |.||.|||||| .||| .|||||.||.|||||.||.|||..|.|||||||
BPUM_1213___o     44 GAGCTGGACAT-GTACGTTCAGAAGATGGTGTGCTCGATCATAATATTGT     92

BSNT_02212___     90 CATGCCAAATGCCAAAAAAGAAGGACAAACCGGCACAAATCCGGAACAGC    139
                     ||||||.|||||.||.|||||.|||.||||.||.||.|||||.||.||..
BPUM_1213___o     93 CATGCCTAATGCAAAGAAAGATGGAGAAACTGGTACGAATCCAGAGCAAT    142

BSNT_02212___    140 TCTTTGCGGCAGGGTATGCTGCATGCTTCGGCGGCGCGCTCGAACACGTA    189
                     |.|||||.||.||.|||||.||.||.|||||.||.||.||.||.||.|||
BPUM_1213___o    143 TATTTGCAGCGGGCTATGCAGCTTGTTTCGGAGGGGCACTTGAGCAAGTA    192

BSNT_02212___    190 GCCAAAGAGCAGAATATCGAAATTGATTCGGAGATTGAAGGGCAGGTCAG    239
                     ||.|||.||||....|||||.|||||.||.||..||||.||.||.|||||
BPUM_1213___o    193 GCGAAAAAGCAAGGGATCGACATTGAATCAGAAGTTGAGGGACATGTCAG    242

BSNT_02212___    240 CCTCATGAAGGATGAGAGCGACGGCGGGTTTAAAATCGGTGTCACACTAG    289
                     .||..|.||.||.||.||.||.|||||.|||||..|.|||||||..|||.
BPUM_1213___o    243 TCTTTTAAAAGACGAAAGTGATGGCGGATTTAAGCTTGGTGTCAAGCTAA    292

BSNT_02212___    290 TTGTG-----AACACGAAAGATTTAGATCGGGAAAAAGCACATGAGCTTG    334
                     |||||     ||    ||.||.|| ||.|..||.|||||..|.|||||.|
BPUM_1213___o    293 TTGTGTCTGCAA----AAGGACTT-GACCATGACAAAGCGAAAGAGCTAG    337

BSNT_02212___    335 TCAACGCCGCTCATGAATTCTGTCCTTACTCAAAGGCAACCAGAGGAAAT    384
                     .|.|.||.||.||||||||||||||.||.|||||.|||||.|||||||||
BPUM_1213___o    338 CCCATGCTGCGCATGAATTCTGTCCATATTCAAAAGCAACAAGAGGAAAT    387

BSNT_02212___    385 GTTGATGTAAAACTAGAATT---AAAATAA    411
                     .|.||.|||.|.||.|||.|   ..|||||
BPUM_1213___o    388 ATCGAAGTAGAGCTTGAAGTGGCTGAATAA    417


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.