Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02218 and BPUM_1215

See Amino acid alignment / Visit BSNT_02218 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:41
# Commandline: needle
#    -asequence dna-align/BSNT_02218___metE.1.24716.seq
#    -bsequence dna-align/BPUM_1215___metE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02218___metE-BPUM_1215___metE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02218___metE-BPUM_1215___metE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02218___metE
# 2: BPUM_1215___metE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2395
# Identity:    1681/2395 (70.2%)
# Similarity:  1681/2395 (70.2%)
# Gaps:         212/2395 ( 8.9%)
# Score: 5721.0
# 
#
#=======================================

BSNT_02218___      1 ATGACAACCATCAAAACATCGAATTTAGGATTTCCGAGAATCGGACTGAA     50
                     .||||||...|.||||||...|||.||||.||||||.||||.||..|.||
BPUM_1215___m      1 TTGACAATTGTTAAAACAAGTAATCTAGGTTTTCCGCGAATTGGTTTAAA     50

BSNT_02218___     51 CCGGGAATGGAAAAAAGCACTTGAAGCGTATTGGAAAGG-CAGTACTGAT     99
                     |.|.||||||||||||||||||||..|.||||||||||| || .||.||.
BPUM_1215___m     51 CAGAGAATGGAAAAAAGCACTTGAGTCTTATTGGAAAGGTCA-AACGGAC     99

BSNT_02218___    100 AAAGATACGTTTTTGAAGCA-AATCGACGAACTATTTTTATCCGCAGTAA    148
                     ...||.||..|.|| ||||| |.|.||.||||.|||||||.|.||..|.|
BPUM_1215___m    100 CGTGAAACCCTCTT-AAGCACACTTGATGAACAATTTTTAACTGCCATTA    148

BSNT_02218___    149 AAACACAAATTGACCAGCAGATTGATGTTGTGCCTGTTTCT---GATTTC    195
                     |||||||||||||.||.||.|||||||||||.||   ||||   ||.||.
BPUM_1215___m    149 AAACACAAATTGATCAACAAATTGATGTTGTTCC---TTCTGGAGACTTT    195

BSNT_02218___    196 ACACAGTATGACCATGTACTCGACACAGCAGTCAGCTTCAACTGGATCCC    245
                     ||....||.||.||.||.|||||.||.||.||.|..|||||.|||||.||
BPUM_1215___m    196 ACCTTCTACGATCACGTGCTCGATACTGCTGTTATGTTCAATTGGATTCC    245

BSNT_02218___    246 GAAACGTTTCAGACA-TTTGACTGA--CGCTACCGATACATACTTCGCTA    292
                     ..|.||.|||.| || .||.|..||  |||||  |||||||||||.||.|
BPUM_1215___m    246 AGAGCGCTTCCG-CAGCTTAAAGGACCCGCTA--GATACATACTTTGCGA    292

BSNT_02218___    293 TCGCCCGCGGAATCAAAGACGCCGTATCTAGTGAAATGACAAAATGGTTT    342
                     |.||..|.||||..|||||.||.||.||.|||||||||||||||||||||
BPUM_1215___m    293 TAGCAAGAGGAACAAAAGATGCTGTCTCAAGTGAAATGACAAAATGGTTT    342

BSNT_02218___    343 AATACAAATTACCATTACATCGTTCCGGAATATGACGAGAGCATTGAGTT    392
                     ||||||||.||.||.|||||||||||.|||||.||..|.||||..||.||
BPUM_1215___m    343 AATACAAACTATCACTACATCGTTCCAGAATACGAAAAAAGCACCGAATT    392

BSNT_02218___    393 CCGTCTGACAAGAAACAAACAACTCGAAGATTATCGCCG----GATCAAA    438
                     |...||.|||...|||||||..||.||||.|||    ||    |.|.|||
BPUM_1215___m    393 CAAACTCACACATAACAAACCGCTTGAAGCTTA----CGAAAAGGTGAAA    438

BSNT_02218___    439 CAGGAATACGGTGTGGAAACAAAGCCTGTGATTGTCGGCCCTTATACGTT    488
                     .|||..|..|||||.||||||||.|||||..|..|.||.|.||||||.||
BPUM_1215___m    439 AAGGCGTTTGGTGTTGAAACAAAACCTGTTGTACTTGGTCTTTATACATT    488

BSNT_02218___    489 CGTTACGCTTGCTAAAGGCTATGAACCATCTGAAGCAAAAGCGATCCAAA    538
                     .||..|.|||.|||||||||||||||||..|||||.|||||.|||.||..
BPUM_1215___m    489 TGTATCACTTTCTAAAGGCTATGAACCAAATGAAGTAAAAGAGATTCAGC    538

BSNT_02218___    539 AACGCCTTGTGCCATTATATGTACAGCTTTTGAAAGAGCTTGAAGAAGAA    588
                     |.|||||..|.||..|.|||..|||||||||.|||||.||||||||||..
BPUM_1215___m    539 AGCGCCTCATCCCTCTTTATACACAGCTTTTAAAAGAACTTGAAGAAGCC    588

BSNT_02218___    589 GGCGTAAAATGGGTTCAAATCGATGAGCCGGCGCTCGTTACCGCCTC-TA    637
                     |||||.||||||||.|||||.||||||||.||.||.||.||.||.|| ||
BPUM_1215___m    589 GGCGTCAAATGGGTACAAATTGATGAGCCAGCACTTGTCACAGCTTCATA    638

BSNT_02218___    638 GTGAAGATGTCCGCGGCGCAAAAGAATTATTTGAAAGCATTACAAGTG-A    686
                      ||||||.||....|.||..||||||.|.|.|.|||..||.|||   | |
BPUM_1215___m    639 -TGAAGACGTGAAAGCCGTCAAAGAAATCTATCAAACGATCACA---GAA    684

BSNT_02218___    687 GC--TTTCATCCTTGAATGTGCTTTTGCAGACGTATTTTGATTCTGTTGA    734
                     ||  |..|..||||.|||.|.|||.|.||.||.||.||||||||.||.||
BPUM_1215___m    685 GCCGTACCTGCCTTAAATATTCTTCTTCAAACATACTTTGATTCAGTAGA    734

BSNT_02218___    735 TGCTTATGAAGAGCTGATCTCTTACCCGGTTCAGGGAATTGGCCTTGATT    784
                     |||.|||||||||||..||.|.|||||.|||.|.|..||.||.|||||||
BPUM_1215___m    735 TGCGTATGAAGAGCTTGTCACATACCCTGTTGAAGCTATCGGTCTTGATT    784

BSNT_02218___    785 TCGTTCACGACAAAGGCAGAAACCTGGAACAGCTTAAAACACATGGCTTT    834
                     |.||.||.||..||||..|.||.||.||.||..|.||||.|||.||.||.
BPUM_1215___m    785 TTGTCCATGATCAAGGACGCAATCTTGATCAAGTGAAAAAACACGGATTC    834

BSNT_02218___    835 CCGACAGACAAAGTGCTGGCAGTTGGCGTTATCGACGGACGCAACATTTG    884
                     ||||.|||||||.|..|.||||..|||||.||.||.|||.|.||.|||||
BPUM_1215___m    835 CCGAAAGACAAAATTTTAGCAGCAGGCGTCATTGATGGAAGAAATATTTG    884

BSNT_02218___    885 GAAAGCGGACCTTG----AAGAGCGTCTCGATGCCGTTCTTGATATTCTC    930
                     ||...|.||.||||    ||||        .||.|||||.|    ||||.
BPUM_1215___m    885 GAGGTCAGATCTTGGCGAAAGA--------TTGACGTTCGT----TTCTG    922

BSNT_02218___    931 AG--CATT-----------GCAAAAGTTGATGAACTGTGGATTCAGCCTT    967
                     ||  ||||           ||..|||     |||.|.|||.|.|||||||
BPUM_1215___m    923 AGGTCATTGCCGGCGCTCAGCCGAAG-----GAAGTATGGTTACAGCCTT    967

BSNT_02218___    968 CCAGCAGCCTGTTGCATGTTCCGGTAGCGAAACACCC---TGATGAGCAT   1014
                     |.||||||.|..|.|||||.||.||.||.||||||||   .||..|||  
BPUM_1215___m    968 CAAGCAGCTTACTTCATGTACCCGTTGCAAAACACCCAAGCGAACAGC--   1015

BSNT_02218___   1015 TTG--GAAAAAGACCTATTGAACGGATTATCCTACGCAAAAGAGAAGCTG   1062
                     |||  ||||||   |||||.||||||.|.||.||.||.|..||.||||||
BPUM_1215___m   1016 TTGAAGAAAAA---CTATTAAACGGACTGTCTTATGCCACTGAAAAGCTG   1062

BSNT_02218___   1063 GCCGAGCTGACAGCTTTGAAAGAAGGTTTAGTATCAGGAAAAGCGGCGAT   1112
                     ||.||..|.|||.|.||.||||||||.|||     |..|||.|||.||  
BPUM_1215___m   1063 GCTGAATTAACAACATTAAAAGAAGGGTTA-----ACAAAAGGCGCCG--   1105

BSNT_02218___   1113 CAGCGAAGAGATT-CAGCAGGC-----TAAGGCTGATATCCAGGCGCTT-   1155
                     ||||     |||| .|||.|.|     |.|.||.||   .||.||.||| 
BPUM_1215___m   1106 CAGC-----GATTGAAGCCGCCATCAATGAAGCCGA---GCAAGCACTTC   1147

BSNT_02218___   1156 --------AAACAGTTTGCAACAGGCGCCAATTCTGA----ACAAAAGAA   1193
                             |||.|.|||||||.|||..|||||.|.||    |||...|||
BPUM_1215___m   1148 TTACTTTAAAAGAATTTGCAAAAGGAACCAATGCGGATTTCACAGCGGAA   1197

BSNT_02218___   1194 AGAGCTTGAGCAATTAAC---TGAT--AAAGACTTCAAGCGTCCGATTCC   1238
                             .|||| .|||   |.||  ||||||||.||||||||..||.|
BPUM_1215___m   1198 --------CGCAA-CAACCTTTCATCGAAAGACTTTAAGCGTCCTGTTGC   1238

BSNT_02218___   1239 GTTTGAAGAACG--TT--TAGCCCTGCAAAATGAATCTCTCGGCCTTCCG   1284
                     .|||||||||||  ||  ||    |.|||||.||||||||.|..||.|||
BPUM_1215___m   1239 CTTTGAAGAACGCCTTCGTA----TCCAAAACGAATCTCTTGAACTGCCG   1284

BSNT_02218___   1285 CTTTTGCCGACGACAACGATCGGCAGCTTCCCGCAGTCTGCTGAAGTGCG   1334
                     ||.||.||.||.|||||.||.|||||||||||||||||||||||||||||
BPUM_1215___m   1285 CTCTTACCAACAACAACCATTGGCAGCTTCCCGCAGTCTGCTGAAGTGCG   1334

BSNT_02218___   1335 GAGCGCACGCCAAAAATGGCGGAAAGCTGAGTGGTCCGATGAACAGTATC   1384
                     .|||||.||.|||||||||||.|||..|||.|||.|..|||.|.|.|||.
BPUM_1215___m   1335 CAGCGCTCGACAAAAATGGCGTAAAAATGAATGGACAAATGCAGAATATG   1384

BSNT_02218___   1385 AAAACTTTATCAATGCGGAAACAAAAAGATGGATTGATATTCAGGAAGAA   1434
                     |..|.|||||.||....|||||||||||||||||||||||||||||.|||
BPUM_1215___m   1385 ATGAATTTATTAAGAAAGAAACAAAAAGATGGATTGATATTCAGGAGGAA   1434

BSNT_02218___   1435 TTGGAGCTTGATGTCCTTGTTCACGGCGAATTTGAACGGACAGACATGGT   1484
                     .|.|..||.|||||.||.||.||.||.|||||||||||.|||||||||||
BPUM_1215___m   1435 ATCGGTCTGGATGTTCTCGTACATGGAGAATTTGAACGTACAGACATGGT   1484

BSNT_02218___   1485 CGAATACTTCGGTGAAAAGCTGGCCGGTTTCGCCTTCACTAAATATGCCT   1534
                     .||||||||.|||||||||||.|||||.||.|||||.||.||||.|||.|
BPUM_1215___m   1485 TGAATACTTTGGTGAAAAGCTAGCCGGATTTGCCTTTACGAAATTTGCTT   1534

BSNT_02218___   1535 GGGTTCAATCATACGGCTCACGCTGTGTCCGCCCGCCAGTCATTTACGGA   1584
                     ||||.|||||.|||||.||||||||.||....||||||.|.|||||.|||
BPUM_1215___m   1535 GGGTACAATCCTACGGATCACGCTGCGTGAAGCCGCCAATTATTTATGGA   1584

BSNT_02218___   1585 GATGTTGAATTTATTGAACCGATGACAGTGAAAGACACAGTCTACGCACA   1634
                     |||||.|||||||..|.|||.|||||.||||||||.||.||.||||||||
BPUM_1215___m   1585 GATGTCGAATTTACAGCACCAATGACCGTGAAAGAGACGGTATACGCACA   1634

BSNT_02218___   1635 GTCATTGACTTCCAAGC-------------ATGTGAAAGGAATGCTGACG   1671
                                  ||||             |.||.||||||||||||||.
BPUM_1215___m   1635 -------------AAGCTTAACGGAGAAAAAGGTCAAAGGAATGCTGACA   1671

BSNT_02218___   1672 GGCCCGGTTACAATCTTAAACTGGTCTTTCCCTCGAAACGACATCTCGAG   1721
                     ||.||.||.||.||||||||||||||||||||..|||..||.|||||..|
BPUM_1215___m   1672 GGTCCTGTCACCATCTTAAACTGGTCTTTCCCAAGAACAGATATCTCACG   1721

BSNT_02218___   1722 GAAAGAAATCGCCTTCCAAATCGGGCTT--GCCCTTCGCAAAGAAGTTAA   1769
                     .|||||.||.||||||||||||  ||||  ||..|.||.|||||.||..|
BPUM_1215___m   1722 AAAAGACATTGCCTTCCAAATC--GCTTTCGCATTACGTAAAGAGGTAGA   1769

BSNT_02218___   1770 AGCGCTTGAAGACGCAGGCATTCAAATCATTCAAGTCGATGAACCAGCGC   1819
                     ||||.|.|||||.|||||.||||||.||||||||||.||||||||.||.|
BPUM_1215___m   1770 AGCGTTAGAAGAAGCAGGGATTCAAGTCATTCAAGTGGATGAACCTGCAC   1819

BSNT_02218___   1820 TGCGTGAAGGCCTTC----CATTGAAAACCCGCGATTGGGATGAGTATTT   1865
                     |..|.|||||.||||    ||..||||    |.|||||||..||.|||||
BPUM_1215___m   1820 TTAGAGAAGGTCTTCCGCTCAAGGAAA----GTGATTGGGCAGACTATTT   1865

BSNT_02218___   1866 GACTTGGGCGGCAGAAGCTTTCAGATTAACCACTTCTTCCGTGAAAAACG   1915
                     .|..|||||.|||||..|.|||.||.||.|.||.||.||.||..||||.|
BPUM_1215___m   1866 AAACTGGGCAGCAGAGTCATTCCGACTATCAACATCATCTGTTCAAAATG   1915

BSNT_02218___   1916 AGACACAAATTCATACACATATGTGCTACAGCAACTTCGAAGATATCGTT   1965
                     |.||.||||||||||||||||||||||||||.||||||||.|||||.||.
BPUM_1215___m   1916 AAACGCAAATTCATACACATATGTGCTACAGTAACTTCGAGGATATTGTA   1965

BSNT_02218___   1966 GATACAATCAATGATCTTGATGCCGATGTGATTACAATCGAACATAGCA-   2014
                     ||.||.|||.|.||.|||||||||||.|||||.|||||.|||||| .|| 
BPUM_1215___m   1966 GACACGATCGAAGACCTTGATGCCGACGTGATCACAATTGAACAT-TCAC   2014

BSNT_02218___   2015 GAAGCCACGGAGGATTTTTAGATTACTTAAAAAACCACCCGTATTTGAAA   2064
                     ||||.||.||.|||||..|.|||||.|||.|.||.||.|||||||||||.
BPUM_1215___m   2015 GAAGTCATGGCGGATTCCTCGATTATTTAGAGAAACATCCGTATTTGAAG   2064

BSNT_02218___   2065 GGGCTTGGCCTTGGTGTATATGACATTCACAGCCCTCGTGTGCC----GT   2110
                     ||.||.||.|||||||||||||||||.||.|||||.||.||.||    ||
BPUM_1215___m   2065 GGTCTGGGACTTGGTGTATATGACATCCATAGCCCGCGCGTTCCATCTGT   2114

BSNT_02218___   2111 CAACTGAAGAAATGTA--CAATATTATCGTTGATGCGCTTG-CCGTCTGT   2157
                     |    ||||||||| |  ||| ||.||.|.|||||| .||| .|||.||.
BPUM_1215___m   2115 C----GAAGAAATG-AGTCAA-ATCATAGATGATGC-ATTGAACGTATGC   2157

BSNT_02218___   2158 CCGACTGACCGCTTCTGGGTAAATCCGGACTGCGGATTGAAAACAAGACA   2207
                     |||||.||.|||||||||||.||.||.|||||.|||.|.|||||||||||
BPUM_1215___m   2158 CCGACAGATCGCTTCTGGGTGAACCCTGACTGTGGACTAAAAACAAGACA   2207

BSNT_02218___   2208 GCAGGAAGAAACGGTTGCAGCATTGAAAAACATGGT---------TGAAG   2248
                     ..||...|||||..||||.||.||||||||||||||         |||||
BPUM_1215___m   2208 AGAGCCTGAAACCATTGCTGCTTTGAAAAACATGGTAACGGCAGCTGAAG   2257

BSNT_02218___   2249 CCGC----AAAACAGGCAAGAGCAAAGCAGACACAGCTAGTATAA   2289
                     .|||    ||             |||||.|.|.||||..|.||||
BPUM_1215___m   2258 TCGCTCGTAA-------------AAAGCTGGCGCAGCATGCATAA   2289


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