Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02229 and BPUM_1219

See Amino acid alignment / Visit BSNT_02229 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:41
# Commandline: needle
#    -asequence dna-align/BSNT_02229___ykoG.1.24716.seq
#    -bsequence dna-align/BPUM_1219___ykoG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02229___ykoG-BPUM_1219___ykoG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02229___ykoG-BPUM_1219___ykoG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02229___ykoG
# 2: BPUM_1219___ykoG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 727
# Identity:     473/727 (65.1%)
# Similarity:   473/727 (65.1%)
# Gaps:          80/727 (11.0%)
# Score: 1401.0
# 
#
#=======================================

BSNT_02229___      1 TTGGAAAAAGGACACATATTAATTGTGGAAGATGAAGAAAAAATCGCCAG     50
                     .||.|.|||||..|.|||.|..|.||.|||||||||.|.|||||.||.||
BPUM_1219___y      1 ATGAACAAAGGGAAGATACTCGTAGTCGAAGATGAAAAGAAAATTGCAAG     50

BSNT_02229___     51 GGTTCT-TCAGCTTGAATTGGAATATGAAGGATA-CAGCGTCACGATCAA     98
                     |||.|| ||| ||.||..|..|.||||||||.|| .|| ||.|||.||||
BPUM_1219___y     51 GGTGCTGTCA-CTAGAGCTTCAGTATGAAGGGTATGAG-GTGACGGTCAA     98

BSNT_02229___     99 ACACAATGGCACAGAAGGTCTTGATGC---GGCAGCGGAAGGCGGGTATT    145
                     |.|.|..||.|.|||.||.|||.|.||   .|.||..|||.||     ||
BPUM_1219___y     99 AGAGACAGGAATAGATGGACTTCAGGCTTTAGAAGAAGAAAGC-----TT    143

BSNT_02229___    146 C--CTTGGTGCTTCTTGATGTCATGCTTCCGGGGCTTAGCGGACTGGAAG    193
                     |  .||||||||.||||||||.||||||||.|...|.|||||.||.||||
BPUM_1219___y    144 CGATTTGGTGCTGCTTGATGTTATGCTTCCAGAATTAAGCGGTCTTGAAG    193

BSNT_02229___    194 TGCTGCGCCG----CTTGAGAAAAACGGATTCGCAGACACCGGTCATATT    239
                     |||||.|..|    |.|.|||.||    ||.||..||||||     ||||
BPUM_1219___y    194 TGCTGAGAAGAGTTCGTAAGACAA----ATACGGCGACACC-----TATT    234

BSNT_02229___    240 AT-----TAACGGCGCGAGACAGTATTCCTGATAAGGTAACAGGTCTGGA    284
                     ||     |.||.||..||||.|||.|.|||||||||||||..||.||.||
BPUM_1219___y    235 ATGTTGATTACAGCAAGAGATAGTGTGCCTGATAAGGTAAGTGGGCTTGA    284

BSNT_02229___    285 CATCGGTGCAAATGACTATGTCACCAAGCCGTTTGAAATCGAGGAATTGC    334
                     ..|.||.||.|||||.|||.|.||.|||||.|||||.||.||.|||||..
BPUM_1219___y    285 TCTTGGAGCGAATGATTATATTACAAAGCCTTTTGACATAGAAGAATTAT    334

BSNT_02229___    335 TTGCGAGAATCAGGGCGGCGCTGCGGCA----AAATGGAACAAAAACTG-    379
                     |.|||.||||..|.||         |||    |.||.|||.|.|||| | 
BPUM_1219___y    335 TAGCGCGAATTCGTGC---------GCAACTCAGATTGAATATAAAC-GA    374

BSNT_02229___    380 -----AAGATATCGGCACCTTTCTTA-CATATGACGATTTGCGGGTGAAC    423
                          ||||.|..|..||....||.| |||| |..|||||....||.|||
BPUM_1219___y    375 GCAACAAGAGAAGGAGACAGAGCTGAGCATA-GCAGATTTAACTGTCAAC    423

BSNT_02229___    424 GAAAAAACCCGTGAAGTGAGACGCGGAGACAAAG---AGG--------TG    462
                     ||.|||||     ||  |||||    |.||||||   |||        |.
BPUM_1219___y    424 GAGAAAAC-----AA--GAGAC----ATACAAAGGGCAGGTCAAATGCTT    462

BSNT_02229___    463 GAATTAACGCCGCGGGAATTTGATCTGCTCGTCTATATGCTAAAGCATCC    512
                     |||.|.||||||.|.||||.|||.|||||.|||.|..||||.||.||||.
BPUM_1219___y    463 GAACTCACGCCGAGAGAATATGACCTGCTTGTCCACTTGCTGAAACATCA    512

BSNT_02229___    513 GCAGCAAGTGCTGACACGGGAGCAAATTCTA--AGCTCAGTATGGGGATT    560
                     ||||||||||||.|||.|.||.||..||.||  ||||  ||.|||||.||
BPUM_1219___y    513 GCAGCAAGTGCTCACAAGAGATCAGCTTTTAACAGCT--GTTTGGGGTTT    560

BSNT_02229___    561 TGATTATATCGGTGATACAAATGTCGTGGACGTCTACATAAGATACATCA    610
                     |||||||.|.||.|||||.||.||.|||||.|||||.||..|.||..|.|
BPUM_1219___y    561 TGATTATTTTGGCGATACGAACGTGGTGGATGTCTATATCCGTTATTTAA    610

BSNT_02229___    611 GAAAAAAACTGGACTATCCTTACGAAAAACAGCTGATCCATACGATTCGC    660
                     |.||||||.|.||.||.||.|.|||||||||.|||||.||.||..|..|.
BPUM_1219___y    611 GGAAAAAAGTCGATTACCCATTCGAAAAACAACTGATTCACACAGTGAGA    660

BSNT_02229___    661 GGGGTCGGCTATGCCATTAAGGGGTAA    687
                     ||.||.||.||||..||.||.||.|||
BPUM_1219___y    661 GGTGTGGGTTATGTGATGAAAGGATAA    687


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