Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02230 and BPUM_1220
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:41
# Commandline: needle
# -asequence dna-align/BSNT_02230___ykoH.1.24716.seq
# -bsequence dna-align/BPUM_1220___ykoH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02230___ykoH-BPUM_1220___ykoH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02230___ykoH-BPUM_1220___ykoH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02230___ykoH
# 2: BPUM_1220___ykoH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1482
# Identity: 903/1482 (60.9%)
# Similarity: 903/1482 (60.9%)
# Gaps: 249/1482 (16.8%)
# Score: 2432.5
#
#
#=======================================
BSNT_02230___ 1 ATGAAGCTGAAGACCAAGATTCATCTATACACTTCGATATCACTGTTGAT 50
||||...|.||.|..|||||.||.||.||.||.|||.|.||..|||| |
BPUM_1220___y 1 ATGAGATTAAAAAATAAGATCCAGCTTTATACGTCGTTGTCTTTGTT--T 48
BSNT_02230___ 51 TTTAT--TAATTTTGGTTCATACCGCAGTATATCTCATTTTTTC-GTCTG 97
||.|| |..|.||..|||||||.||..|.|||.|.|||||||| .|| .
BPUM_1220___y 49 TTAATGGTGCTCTTATTTCATACAGCCATTTATTTTATTTTTTCAATC-A 97
BSNT_02230___ 98 CGCTGACATCAAAGGATGCGGCCCGGCTTGCTGATGAGACGGATAACATT 147
|..||||...|||.|||..|.||.||||..||||.|.|.|.||.||.||.
BPUM_1220___y 98 CCTTGACGCAAAAAGATATGTCCAGGCTGTCTGAAGTGGCTGAAAATATC 147
BSNT_02230___ 148 GCCGAAGCGCTGCGTGCCGCTGAAA-----CAGAAGGAG-TGGCTTTGCA 191
||| |.|||| |.||| ||||||.|| .||..||.||
BPUM_1220___y 148 GCC--ATCGCT---------TTAAAAAAATCAGAAGAAGAAGGTCTTCCA 186
BSNT_02230___ 192 -----GGATATGCTGCAGGCCTATCTTCCGGCAAATGGCATGGTGCGTGT 236
.||..|||||.|.||.||.||.||...||||||.|||.|.|||||
BPUM_1220___y 187 TCATCAGAGCTGCTGAAAGCATACCTGCCCCAAAATGGTATGATCCGTGT 236
BSNT_02230___ 237 AGTG-----AATGGTGATCAA--AAAGCCGTTATGACGATCACAAAAGAA 279
.||| ||.| |||.|| ||||| ||||..|||||||.|
BPUM_1220___y 237 CGTGACAGAAACG--GATGAATCAAAGC-----TGACTGTCACAAAGG-- 277
BSNT_02230___ 280 AAAGCCTATAAAGATT--TTCCTCTCTCTTTTCATA-------GCGGCGA 320
||.| ||.|.|| |||.|..|..|||||||| | ||| |
BPUM_1220___y 278 --AGTC---AACGTTTAGTTCATTGCCTTTTTCATATGAATCTG-GGC-A 320
BSNT_02230___ 321 AACGGCAGATGTGAGGAAACATGACGGCAAGC---TGTTTGCCGAGGCTG 367
.||.|||||..|.|...||.||.| ||||| ||.||||....||||
BPUM_1220___y 321 GACAGCAGAAATCAAAGAATATAA---CAAGCATATGGTTGCGTTCGCTG 367
BSNT_02230___ 368 CTGTTCCGGTGATTTGGACCGATGGACAAG-TCGTGTCTCTTCAGCTGGT 416
|..||||.|||||.|||||..|||| |.|| |.|||||.|||||..|...
BPUM_1220___y 368 CGATTCCTGTGATATGGACAAATGG-CGAGATTGTGTCGCTTCAAGTATA 416
BSNT_02230___ 417 TGAAAGACTGGAGAACACAGAAGAGAGTCTGTTT----CTGCTGAAAATC 462
||||..|.|.||.||.|||||||||| ..|| ||..|.|||||.
BPUM_1220___y 417 TGAAGAAATCGAAAATACAGAAGAGA----ACTTAGCGCTATTAAAAATG 462
BSNT_02230___ 463 ATCTTAATCGCTGCAAGTGCTGCTGTCTGCATTG---CTTCTTTTTTTGC 509
||.|||||.||||| |.|| |.|.|.|..|||| .|||||.||||||
BPUM_1220___y 463 ATTTTAATGGCTGC--GGGC-GTTTTATTTATTGTGCTTTCTTATTTTGC 509
BSNT_02230___ 510 AGGCAGCTTGCTAGCCCGCCGAATCATCAATCCGATCAGACGATTAATGA 559
||||..|.|..||.|....|.||||.||...|||||.||.|||.|.|.||
BPUM_1220___y 510 AGGCCACATTTTAACAAAACAAATCGTCCGGCCGATTAGTCGAATGACGA 559
BSNT_02230___ 560 TCACAATGAAAGACATACAGCGA--------GACAAAGAATTTA----AA 597
..||.||||| .|||| ||.||.|.||||| ||
BPUM_1220___y 560 GTACGATGAA--------GGCGAGTATGAAGGAGAAGGCATTTAAACGAA 601
BSNT_02230___ 598 ACGATTTCTTTAGAAGAACAG-----TCCAACGATGAATTGTATCAAATG 642
.|||.|| ||||| ||.||.||||||||||||||||||
BPUM_1220___y 602 TCGAATT---------AACAGGCGATTCAAAGGATGAATTGTATCAAATG 642
BSNT_02230___ 643 GGGCTGACATTTAATGAAATGGCAATGATGCTGAAGGAGCACTATGATAA 692
||.|..||.||||||||||||.||...||.||..||.||||.|||||.||
BPUM_1220___y 643 GGCCAAACCTTTAATGAAATGTCAGAAATTCTCGAGAAGCATTATGAAAA 692
BSNT_02230___ 693 ACAGCAGCAATTTGTTCAAGATGCTTCACACGAATTGAAAACCCCGCTCA 742
|.|||||||||||.||||.|||||.|||||||||||.||.||.|||.|.|
BPUM_1220___y 693 AGAGCAGCAATTTCTTCATGATGCCTCACACGAATTAAAGACGCCGATTA 742
BSNT_02230___ 743 C---TATTATAGAAAGCTACAGCAGCCTGA-----TGAAGCGATGGGGGG 784
| .||||| .|||||||| |.| |.|||||.| |||||
BPUM_1220___y 743 CGGTCATTAT---GAGCTACAG-----TCATTTACTCAAGCGCT-GGGGG 783
BSNT_02230___ 785 CAAAAAAG-CCGGAGGTGCTTGAGGAGTCGATAGAAGCCATTCACTCA-G 832
||||.|.| ||.|||||..|.||.||.||.....||||.||||| |.| |
BPUM_1220___y 784 CAAACACGTCCAGAGGTTGTAGAAGAATCCTCTCAAGCGATTCA-TGATG 832
BSNT_02230___ 833 AAGCGGTGCATATGAAAAAACTGACCAATCAGCTTTTGGCGCTGGCCAAA 882
||||||...|.|||||||.||||||..||||..|..||.|.||.||.|||
BPUM_1220___y 833 AAGCGGAAAAAATGAAAAGACTGACAGATCAATTGCTGACACTTGCAAAA 882
BSNT_02230___ 883 -------AGCCATCAAGGACTCGAGGTTGATCTGAAAACAATCGATC-TG 924
|||| .|||.|.||.|||.||||..||.|.|||| ||
BPUM_1220___y 883 AATGGTCAGCC-------GCTCTATGTGGATATGAAGCCAGTTGATCTTG 925
BSNT_02230___ 925 ATTA-------AAGCGGCGCGCGCGGTTATG-CAAACGCT---------- 956
.|.| ||.|.|| |.|| ||.||.||
BPUM_1220___y 926 GTCATATGTGCAATCAGC---------TTTGTCATACACTTGAAGTGGCC 966
BSNT_02230___ 957 -CCAGT----CCGTT-TATCAGCGTGACATATTGCTTGAAACAGATAAAG 1000
|||.| ||.|| .||| .|||| ||| ||||||||
BPUM_1220___y 967 ACCAATCGAACCATTCAATC-TCGTG------TGC---AAACAGAT---- 1002
BSNT_02230___ 1001 AGAGCCTGCTTGT----AAAGGCAGATGAAGAACGCATCAAGCAGCTGTT 1046
.|||| ||||.| .|||| |||.|||||....|||||.|||||.||
BPUM_1220___y 1003 -CAGCC-GCTTATTGCGGAAGG-AGACGAAGAGAAAATCAAACAGCTTTT 1049
BSNT_02230___ 1047 GACCATTTTGCTTGATAATGCAATAAAGTATAGTGAAAAG--CCTATTGA 1094
||||||.|||.||||||||||..|.||.|||||| |.|| ||..||
BPUM_1220___y 1050 GACCATCTTGATTGATAATGCGGTCAAATATAGT--ACAGCACCAGTT-- 1095
BSNT_02230___ 1095 GATGTCAGCC-------GGAACGAGGAATGGACGGCCATTTCTATCAGTG 1137
|||||.| || ||||.||||| || ||||.|||.|.|||||.
BPUM_1220___y 1096 GATGTGA-CCTGCGGATGGAAAGAGGA---GA-GGCCGTTTATTTCAGTC 1140
BSNT_02230___ 1138 AGGGATGAAGGTATCGGAATACCTGAGGAGCATATCCCGCATTTGTTCGA 1187
.|.||..|.||.||.||.|||...||.|||.||.|.|||.|..|.||.||
BPUM_1220___y 1141 GGTGACCATGGGATTGGCATAAAAGAAGAGGATCTTCCGAAAATCTTTGA 1190
BSNT_02230___ 1188 ACGGTTCTACCGGGCAGATGAGGCACGAAACAGAAAAACAGGCGGAACGG 1237
.||.||.|.|||.|..|||||.|||.|||||||..|.||.||||||||||
BPUM_1220___y 1191 CCGCTTTTTCCGTGTGGATGAAGCAAGAAACAGTGAGACCGGCGGAACGG 1240
BSNT_02230___ 1238 GTTTAGGCCTTTCCATTGCCAAGCAAATCGCTGATGAGCATGGCATTGAG 1287
||.|.||.|||||.|||||.||||||||.||.||.||||||||...||||
BPUM_1220___y 1241 GTCTTGGTCTTTCAATTGCGAAGCAAATTGCAGAAGAGCATGGAGCTGAG 1290
BSNT_02230___ 1288 CTGTCTGTCAAAAGCAAGCCG----GGACAAGGAACAGCTGTCACCATGC 1333
|||...|| ||..||||| ||..||||.|||.|..|.|||||.|
BPUM_1220___y 1291 CTGAAGGT----AGATAGCCGAATCGGCGAAGGGACAACCATGACCATTC 1336
BSNT_02230___ 1334 AATTCAGCGAACAGAATGGGGGAGGCCGATGA 1365
..||| .|||| |.||
BPUM_1220___y 1337 TTTTC-CCGAA-ATAA---------------- 1350
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