Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02237 and BPUM_1225
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:42
# Commandline: needle
# -asequence dna-align/BSNT_02237___ykoK.1.24716.seq
# -bsequence dna-align/BPUM_1225___ykoK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02237___ykoK-BPUM_1225___ykoK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02237___ykoK-BPUM_1225___ykoK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02237___ykoK
# 2: BPUM_1225___ykoK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1388
# Identity: 1033/1388 (74.4%)
# Similarity: 1033/1388 (74.4%)
# Gaps: 61/1388 ( 4.4%)
# Score: 3684.0
#
#
#=======================================
BSNT_02237___ 1 ATGGTTCAAAACATGACCTATGACGAACTCATTTTACGCATCATTATTTT 50
|||.|.|||||.||.||.||.||.||||||||||||||||||||||||||
BPUM_1225___y 1 ATGATACAAAATATAACGTACGATGAACTCATTTTACGCATCATTATTTT 50
BSNT_02237___ 51 ACTGAGAGACGG-----GAAAATCAGGGATTTCAGAAGTGTTATTGATGA 95
|.|.|||||.|| ||||| ||.||.|.||...|.||.||.||
BPUM_1225___y 51 ATTAAGAGATGGAAAACGAAAA-----GAATTTAAAAACATCATGGAAGA 95
BSNT_02237___ 96 GCTTCAGCCCTATGACATGGC--ATTTATTTTTAAAGAAATGCCGGAAAA 143
.||||||||.|||||.||||| |.||| ||||||||..|.||.||.||
BPUM_1225___y 96 ACTTCAGCCATATGATATGGCCTACTTA--TTTAAAGAGCTTCCAGAGAA 143
BSNT_02237___ 144 ACACCGCGCCCGCTAT--TTATCTTATTTAACTGTAGACGATATCACTGA 191
|||||||..||||| | |.|.||| ||||.|.||.||.||..|.||.||
BPUM_1225___y 144 ACACCGCAGCCGCT-TCCTCAGCTT-TTTACCAGTCGATGACGTGACAGA 191
BSNT_02237___ 192 TATGATCGGGGAGCTGGAACGCGAATTTCAGCTTGTCGT-CTTAAATAAA 240
.|||||.||.|||.||||.||.||||.|||.....|||| |||.|| |||
BPUM_1225___y 192 AATGATGGGTGAGTTGGAGCGGGAATATCAAGAAATCGTCCTTGAA-AAA 240
BSNT_02237___ 241 GT-CGGAAAAACAAAAGCAACACTGGCGATGAACAAAATGGACAACGATG 289
|| .|||||.|| |||||.||..|.|..|..|||||||||||.|||||||
BPUM_1225___y 241 GTAGGGAAAGAC-AAAGCGACCTTCGTCACAAACAAAATGGATAACGATG 289
BSNT_02237___ 290 ACCTCGCTCAA-TTGCTTGAAGAAATGGACGAAGAACTGAAGGAACAGCT 338
|.||.|| ||| |||.||||.||.|||||.||.||.||.|||||.|||||
BPUM_1225___y 290 ATCTAGC-CAACTTGTTTGATGAGATGGAGGATGAGCTAAAGGATCAGCT 338
BSNT_02237___ 339 TTTGTCCAGCATGGAAGCGTCAGAG---TCAAAAGCTGTACAGC-TCTTG 384
|||.||.|.|||||||| ||||| ||.|||||.||.|||| ||||
BPUM_1225___y 339 TTTATCTAACATGGAAG---CAGAGGAATCCAAAGCCGTCCAGCTTCTT- 384
BSNT_02237___ 385 ATGAATTACCCGGCTGATTCAGCGGGACGCATGATGACAAACCGGTATGT 434
|||||||||||.|||||..||||||||||.||.|||||.||.||.|||||
BPUM_1225___y 385 ATGAATTACCCTGCTGAGACAGCGGGACGGATCATGACCAATCGTTATGT 434
BSNT_02237___ 435 GTGGATCCCTCAGCATTACACGGTAAAAGACGCGGTCGTCAAACTGAAAA 484
.|||||.|||||||||||.||.|||.|.||.||.||.||.||.|||||||
BPUM_1225___y 435 TTGGATACCTCAGCATTATACAGTACAGGATGCAGTTGTGAAGCTGAAAA 484
BSNT_02237___ 485 GCTTCGCTGAAATAGCTGAATCGATCAACTACTTATATGTTATTAATGA- 533
||||.||||||||.||.|||||.||||||||.||||||||.||||||||
BPUM_1225___y 485 GCTTTGCTGAAATTGCAGAATCAATCAACTATTTATATGTGATTAATGAT 534
BSNT_02237___ 534 -AAGCAAACAGCTGGTTGGGGTTCTTTCCTACCGCGATTTGATTCTGGGT 582
|| |||||.||.||.||.||.||.||.|||||.|||.|.|||.|.|||
BPUM_1225___y 535 CAA--AAACAACTCGTAGGCGTGCTCTCATACCGGGATCTCATTTTAGGT 582
BSNT_02237___ 583 GAACCTGAAGAAAAGGTGCAGGATTTAATGTTTACCCGCGTCATATCAGC 632
|||||.||.|||||.||.||||||.|.||||||||..|.||||| .||
BPUM_1225___y 583 GAACCGGATGAAAAAGTACAGGATCTTATGTTTACAAGAGTCAT---TGC 629
BSNT_02237___ 633 AGATG----CTCTTCAGGACCAGGAAGAAGTTGCCCGC----CTGATTGA 674
.|.|| || ||||.||.|||||.|||.| ||| ||||||||
BPUM_1225___y 630 CGTTGGAGCCT-TTCAAGATCAGGAGGAAAT----CGCAAAACTGATTGA 674
BSNT_02237___ 675 ACGTTACGATTTTTTGGCAATACCGGTTGTAGAAGAAAACAACGTGCTTG 724
|||.||.||||||.|.||.||.||.|||||.|||||||||||.||.||.|
BPUM_1225___y 675 ACGATATGATTTTCTTGCGATTCCTGTTGTGGAAGAAAACAATGTCCTAG 724
BSNT_02237___ 725 TCGGCATTGTGACAGTCGATGATATTATCGACGTCGTTATTCGTGAAGCT 774
||||.||||||||||||||||||||.||.||.||.||.||||..||.||.
BPUM_1225___y 725 TCGGAATTGTGACAGTCGATGATATCATTGATGTTGTCATTCAAGAGGCA 774
BSNT_02237___ 775 GATGAGGATTACGAAAAATTTGCCGCTTCCGGTAAAGACATCACCTTTGA 824
|..|||||.||.|||||.|||||.||.||.||||||||.|||||.||.||
BPUM_1225___y 775 GGCGAGGACTATGAAAAGTTTGCTGCCTCTGGTAAAGATATCACGTTCGA 824
BSNT_02237___ 825 CACAAAAGCTTACGTGGCGGCATACCGGCGCCTGCCATGGCTAATCTTAC 874
||||...||.|..|||||||||||.||.||.||.||.|||||.||.||.|
BPUM_1225___y 825 CACACCGGCATTTGTGGCGGCATATCGCCGTCTTCCTTGGCTCATTTTGC 874
BSNT_02237___ 875 TCTTGTTTATCGGACTGATTTCAGGAAGCATTATCAGCTATTTTGAAGAT 924
|||||||.|||||.|||||||||||.||.|||.|.|..||||||||||||
BPUM_1225___y 875 TCTTGTTCATCGGGCTGATTTCAGGCAGTATTTTAAATTATTTTGAAGAT 924
BSNT_02237___ 925 GCGCTGAAGCAGGTTGTAGCGCTTGCGTTTTTCATGCCGATGGTGTCAGG 974
.|.||..||||.||||||||..|.||.||.||||||||||||.|..|.||
BPUM_1225___y 925 ACCCTTCAGCAAGTTGTAGCTTTAGCATTCTTCATGCCGATGATTGCTGG 974
BSNT_02237___ 975 GATGACAGGAAATACGGGAACACAATCTCTTGCGGTTGTCATCAGAGGTT 1024
.||||||||.|||||.||.|||||.||||||||.||||||||..||||..
BPUM_1225___y 975 TATGACAGGGAATACAGGGACACAGTCTCTTGCTGTTGTCATTCGAGGGC 1024
BSNT_02237___ 1025 TGTCTAAAGAAGAAATGAAC-AAAAAAACGATTGTGCGCCTGATCTTCCG 1073
|.||.||||||| |||.||| ||||||||.|||||||||||.||.||..|
BPUM_1225___y 1025 TCTCAAAAGAAG-AATTAACAAAAAAAACCATTGTGCGCCTTATTTTTAG 1073
BSNT_02237___ 1074 GGAGTTCAGAACAAGTATTTTTATCGGAGCGGTTTGTTCTGTGCTGATTG 1123
.|||||.|||.|||||||||..||.||....||||||||..|..|.|||.
BPUM_1225___y 1074 AGAGTTGAGAGCAAGTATTTACATTGGGATTGTTTGTTCCATTATTATTA 1123
BSNT_02237___ 1124 CGATTGTCTCCATCATATGGCAGGGGAATGCGCTTTTGGGATTTGTTGTC 1173
|.||.|||.|.||..|.|||||.||.|||..|.||||.||.|||||||||
BPUM_1225___y 1124 CAATCGTCGCAATGGTGTGGCAAGGCAATATGATTTTAGGTTTTGTTGTC 1173
BSNT_02237___ 1174 GCCTCTTCGCTGTTCTT--AACCTTAATCATCGGCACGATGTCAGGAACG 1221
|..||.||.||| ||| |||..|.||.||.||.||.|||.||||.|||
BPUM_1225___y 1174 GGTTCCTCACTG--CTTGCAACACTGATTATTGGGACAATGGCAGGTACG 1221
BSNT_02237___ 1222 ATTATCCCTATTATTTTGCACAAACTGAAAGTGGACCCGGCGATTGCTTC 1271
.|..|.||.||||||||.||||.|.|.||.|||||||||||.|||||.||
BPUM_1225___y 1222 GTCGTGCCGATTATTTTACACAGATTAAATGTGGACCCGGCCATTGCATC 1271
BSNT_02237___ 1272 TGGACCGCTGATTACAACGTTAAACGATATTTTATCTTTATTAATCTACT 1321
|||.||.|||||.||.||.||.||.|||||.|||||.|||.|.|||||.|
BPUM_1225___y 1272 TGGGCCACTGATCACTACATTGAATGATATCTTATCCTTACTGATCTATT 1321
BSNT_02237___ 1322 TTGGCATTGCCACTGCATTCATTCACTCA-TTATAA-- 1356
||||.|||||.||.||||||.|||||.|| |.||..
BPUM_1225___y 1322 TTGGAATTGCTACAGCATTCCTTCACACACTGATGTAG 1359
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