Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02238 and BPUM_1230

See Amino acid alignment / Visit BSNT_02238 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:42
# Commandline: needle
#    -asequence dna-align/BSNT_02238___tnrA.1.24716.seq
#    -bsequence dna-align/BPUM_1230___tnrA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02238___tnrA-BPUM_1230___tnrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02238___tnrA-BPUM_1230___tnrA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02238___tnrA
# 2: BPUM_1230___tnrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 341
# Identity:     258/341 (75.7%)
# Similarity:   258/341 (75.7%)
# Gaps:          19/341 ( 5.6%)
# Score: 958.0
# 
#
#=======================================

BSNT_02238___      1 ATGAC-CACAGAAGATCAT-TCTTATAAAGACAAAAAAGTGATTTCAATC     48
                     ||||| || .||||| |.| |||||||||||.||||||||.|||||||||
BPUM_1230___t      1 ATGACGCA-GGAAGA-CGTATCTTATAAAGATAAAAAAGTCATTTCAATC     48

BSNT_02238___     49 GGAATTGTGAGTGAATTGACAGGATTGTCCGTAAGACAGATCAGGTATTA     98
                     ||.|||||.||||||||.|||||..|.||.||.||.||.|||.|.|||||
BPUM_1230___t     49 GGGATTGTCAGTGAATTAACAGGGCTATCTGTCAGGCAAATCCGATATTA     98

BSNT_02238___     99 TGAGGAACGAAAGCTCATTTACCCGCAGCGTTCTTCAAGGGGGACAAGAA    148
                     |||||||||.|..|||||.|||||.|||||.||..||||.||.||..|.|
BPUM_1230___t     99 TGAGGAACGCAGACTCATCTACCCCCAGCGATCAACAAGAGGCACGCGTA    148

BSNT_02238___    149 AATACTCCTTTGCCGATGTGGAGCGGCTGATGGATATCGCCAATAAGCGT    198
                     ||||.||.|||.|.|||||.||.||..|.||||||||||||||.||.||.
BPUM_1230___t    149 AATATTCTTTTTCTGATGTAGAACGATTAATGGATATCGCCAACAAACGA    198

BSNT_02238___    199 GAAGACGGCGTACAGACGGCAGAGATTTTAAAGGATATGCGCAAAAAAGA    248
                     ||||||||.||.||.||.|||||||||||.||.||.|||...||||||||
BPUM_1230___t    199 GAAGACGGTGTGCAAACAGCAGAGATTTTGAAAGACATGAAGAAAAAAGA    248

BSNT_02238___    249 ACAGATGTTAAAAAACG------ATCCGCAAGTGCGGAAAAAAATGCTGG    292
                     ||||...|||||||.||      ||    ||     ||||||.|||||||
BPUM_1230___t    249 ACAGGCCTTAAAAAGCGGACAATAT----AA-----GAAAAAGATGCTGG    289

BSNT_02238___    293 AGGGGCAGCTTAATGCTCACTTTCGGTACAAAAACCGTTAA    333
                     |.||.||..|||||||.|||||.|||||||||||.||.|||
BPUM_1230___t    290 AAGGTCAAATTAATGCACACTTCCGGTACAAAAATCGATAA    330


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