Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02268 and BPUM_1240
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:43
# Commandline: needle
# -asequence dna-align/BSNT_02268___ykrK.1.24716.seq
# -bsequence dna-align/BPUM_1240.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02268___ykrK-BPUM_1240.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02268___ykrK-BPUM_1240.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02268___ykrK
# 2: BPUM_1240
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 785
# Identity: 489/785 (62.3%)
# Similarity: 489/785 (62.3%)
# Gaps: 154/785 (19.6%)
# Score: 1419.5
#
#
#=======================================
BSNT_02268___ 1 ATGAACAT------TTTTAAACTCTCTCGAACCGATATG----GTGCGGC 40
|| |||||||.|..|..|||..||.||| || |
BPUM_1240 1 ------ATGGGTGCTTTTAAATTAACGAGAATTGACATGACAAGT----C 40
BSNT_02268___ 41 TGCTCTATTCCCTAAAAGGACAAGGAGAACATAGC-CCGCTCGACATTCT 89
|.||.|||||.|||||||||.|.|||||.| ||.| |||||
BPUM_1240 41 TTCTTTATTCTCTAAAAGGAGAGGGAGATC-TAACTCCGCT--------- 80
BSNT_02268___ 90 CGTCCAATCAGCGA--ACATGTCAGCAGAAAAAGCAGCCAATCATCTAGA 137
|||||.| |.|| |.|.|.|.||||..||.|||.||||..||
BPUM_1240 81 -------TCAGCTATTAAAT-TTATCTGTAAAAAAAGACAAACATCACGA 122
BSNT_02268___ 138 A---------------ATTCCTGAATTTCTTACAAGATA----TGAACGA 168
| ||.|||...|||.|| ||.| |||||||
BPUM_1240 123 ACTTGACGAGCTCATCATCCCTTCTTTTTTT----GAGAGGCTTGAACGA 168
BSNT_02268___ 169 AAAAAACAGAAAAAAGAATACGGACTGTCTACAAATGAAATCGTAGAGCT 218
...|||||.|||..|||..|.|||||.||.|||||||||||.|||||..|
BPUM_1240 169 CGGAAACAAAAATCAGAGCATGGACTCTCCACAAATGAAATTGTAGAATT 218
BSNT_02268___ 219 TGGCAA-CTTATGCGAGCTGACTTC-GTTAAAGTCAACCGCGATTCAAAA 266
.||.|| ||| |||||.|||||||| .||||| ||.||.|||||||||||
BPUM_1240 219 AGGAAATCTT-TGCGAACTGACTTCTCTTAAA-TCGACAGCGATTCAAAA 266
BSNT_02268___ 267 CTGGGTAAAGCGTGATATCAAAGATCTGATCGGACACCCTGAGCTAGGCA 316
||||.|.|||||||||||.||||||.||||.||.|||||||||||.||.|
BPUM_1240 267 CTGGATCAAGCGTGATATTAAAGATATGATTGGCCACCCTGAGCTTGGAA 316
BSNT_02268___ 317 AAAAATACTCAATTGAACAGGCAGTTATTCTTTTAATTGTACGTGATTTA 366
|.||.|||||||||||.||||..||||||.|.||||||||..|.||||||
BPUM_1240 317 AGAAGTACTCAATTGATCAGGTCGTTATTTTATTAATTGTGAGAGATTTA 366
BSNT_02268___ 367 AAATCCATTTATGACTTTGAACACATACGGGCTATTTTAAAAGT-GGCC- 414
|||||..|||.|||||||||...|||.||..|.||.||| | .|||
BPUM_1240 367 AAATCAGTTTTTGACTTTGATGCCATCCGCACCATCTTA----TCTGCCT 412
BSNT_02268___ 415 --TTTAACACAATCTCAGACAGATCTGATGATGTCATCAGCCCGATTGC- 461
||||||||.||..|.||..||.||||||||.|.||.||.|| |||||
BPUM_1240 413 TATTTAACACGATTACGGATCGAACTGATGATATTATTAGTCC-ATTGCG 461
BSNT_02268___ 462 TTATTATGAAAGC---TGCGCATATGTGCTTGATGCCATCCATCACCAAG 508
||.||||| |||| ||||| ||||.||||||...||..||||.|
BPUM_1240 462 TTTTTATG-AAGCATATGCGC--ATGTCCTTGATTTTATTTATCATC--- 505
BSNT_02268___ 509 ATACTCCTT---CCATGAAAGAATCAAATCTGCAGGAGATCGCCGAACAG 555
|.||.|||| |..|.||||||.||||..|.|.|||.|||.| |.||
BPUM_1240 506 ACACGCCTTTTCCGTTAAAAGAAACAAACTTACGGGAAATCAC---AGAG 552
BSNT_02268___ 556 G---AGACAGAGCGTCTCCGTCACCGTTTTGAAGAA----CTGAATGA-- 596
| |||||||....||.|| ||||||| ||||||.|
BPUM_1240 553 GTTCAGACAGATAAGCTACG---------TGAAGAATTTGCTGAATTATC 593
BSNT_02268___ 597 -CAG--CCAATGGCTTAAAATCAGACAGATTATCGCTATTA-CAGTCCTC 642
||| ||||||||.|...||||.| |.||||| |||| ||
BPUM_1240 594 GCAGCACCAATGGCGTTTGATCAAA---------GGTATTATCAGT--TC 632
BSNT_02268___ 643 -TCCATTTTGACATTCCATA-TTCA----GGCA----ACCGCACATAAAA 682
.||.||||..|..||..|| |||| .||| ||.|||||..|||
BPUM_1240 633 AACCGTTTTTTCTGTCTTTACTTCACACTTGCAAAGTACAGCACAAGAAA 682
BSNT_02268___ 683 TGACAG---CAGACATTCTATAG------------ 702
||| .| ||.||| |||.||
BPUM_1240 683 TGA-TGTTTCATACA--CTACAGCATCAGGATTAA 714
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