Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02282 and BPUM_1249
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:44
# Commandline: needle
# -asequence dna-align/BSNT_02282___mtnA.1.24716.seq
# -bsequence dna-align/BPUM_1249___mtnA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02282___mtnA-BPUM_1249___mtnA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02282___mtnA-BPUM_1249___mtnA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02282___mtnA
# 2: BPUM_1249___mtnA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1126
# Identity: 763/1126 (67.8%)
# Similarity: 763/1126 (67.8%)
# Gaps: 128/1126 (11.4%)
# Score: 2523.0
#
#
#=======================================
BSNT_02282___ 1 -------ATGACCCATTCATTTGCTGTTCCACGTTCTGTTGAATGGAAAG 43
|.|| |||||..||.||.||||||||.||||||.|||
BPUM_1249___m 1 TTGTCTAAAGA-------ATTTGAAGTCCCCCGTTCTGTCGAATGGGAAG 43
BSNT_02282___ 44 AAA--CAGCTATTACCATTTTAAATCAGCAAAAGCTTCCTGATGAGACGG 91
||| || |||||.||||||.|||||||||||..|.||.|..||.||.|
BPUM_1249___m 44 AAAACCA--TATTAACATTTTGAATCAGCAAAAATTACCGGCAGAAACCG 91
BSNT_02282___ 92 AATATTTGGAGC-------TGACGACGAAAGAGGATGTATTTGATGCGAT 134
|.||| |||| | ||.|||||.||.||.|.||||||.||
BPUM_1249___m 92 --TGTTT-GAGCATCTATAT----ACAAAAGAAGACGTGTATGATGCCAT 134
BSNT_02282___ 135 TGTCACGCTCAAAGTAAGGGGCGCTCCGGCGATCGGCATTACGGCTGCCT 184
|||||||.|.|||||..|.||.||.||.||.||.||||||||.||.||.|
BPUM_1249___m 135 TGTCACGTTAAAAGTGCGTGGAGCACCTGCCATTGGCATTACAGCAGCTT 184
BSNT_02282___ 185 TCGGGCTGGCGCTTGCTGCCAAAAACATTGAAACAGA------TAATGT- 227
||||.||||||||...||||.||.|||||||.||||| |.||||
BPUM_1249___m 185 TCGGACTGGCGCTCAGTGCCCAAGACATTGAGACAGAAGACATTGATGTG 234
BSNT_02282___ 228 ------CACGGA---ATTCCGCCGCAGACTGGAAGACATCAAACAATATT 268
||.|.| |||| |.||.|||.||||||
BPUM_1249___m 235 TTTAAACAAGAAGTCATTC----------------AGATAAAAGAATATT 268
BSNT_02282___ 269 TAAACAGCTCACGGCCTACCGCCATTAATTTGTCATGGGCGCTTGAGAGA 318
|||||||..|.||.||.|||||..|.|||.|..|.|||||..|.|||.|
BPUM_1249___m 269 TAAACAGTGCTCGTCCAACCGCTGTGAATCTAGCCTGGGCATTGGAGCG- 317
BSNT_02282___ 319 CTGAGTCATT-CGGTCGAAAACGCGAT------------TTCCGTAAATG 355
||..|| ||| ||| || |||.||.||||
BPUM_1249___m 318 ----GTTGTTGCGG-------CGC-ATTGAGCGTGCAGCTTCAGTCAATG 355
BSNT_02282___ 356 AAGCAAAAACAAACCTTGTCCATGAAGCCATTCAGATTCAGGTCGAGGAT 405
.|||.||||||.||||||||||||||||||||||.|||||..||||.|||
BPUM_1249___m 356 CAGCCAAAACAGACCTTGTCCATGAAGCCATTCAAATTCAAATCGAAGAT 405
BSNT_02282___ 406 GAGGAAACGTGCCGGTTGATCGGCCAAAACGCCCTGCAGCTTTTCAAAAA 455
||.|||||.|||.|....|||||.|||||.||.||.|||||.||.|||..
BPUM_1249___m 406 GAAGAAACATGCAGACAAATCGGTCAAAATGCACTCCAGCTCTTTAAATC 455
BSNT_02282___ 456 AGGCGACAGGATCATGACAATCTGCAATGCCGGCTCAATCGCGACAAGCC 505
|||.||..||||.|||||.||.||||||||.||.||.|||||.|||||||
BPUM_1249___m 456 AGGTGATCGGATTATGACCATTTGCAATGCAGGTTCCATCGCCACAAGCC 505
BSNT_02282___ 506 GCTATGGAACGGCGCTAGCTCCGTTTTACTTGGCCAAACAAAAAGATTTG 555
|.||.|||||.||.||.|||||.||.||.||.||.|||.|.|||.||.|
BPUM_1249___m 506 GTTACGGAACAGCCCTTGCTCCATTCTATTTAGCGAAAAAGAAAAATCT- 554
BSNT_02282___ 556 GGAT-TGCACATTTATGCCTGTGAAACAAGGCCTGTCCTGCAAGGTTCAC 604
.||| |.||||||||||||||.||||||.|.|||||.||.|||||..|..
BPUM_1249___m 555 CGATCTTCACATTTATGCCTGCGAAACACGCCCTGTTCTCCAAGGGGCTA 604
BSNT_02282___ 605 GCCTTACTGCTTGGGAGCTGATGCAGGGGGGCATTGATGTCACTCTGATC 654
|.||.||..|.||||||||.|||||.||.|||.|.|||||.||.||.|||
BPUM_1249___m 605 GACTGACAACATGGGAGCTCATGCAAGGCGGCGTAGATGTGACGCTCATC 654
BSNT_02282___ 655 ACAGACAGCATGGCCGCCCATACGATGAAGGAAAAACAAATTTCCGCTGT 704
|||||.|..|||||.||.||.||||||||||||||.||||||||.|||||
BPUM_1249___m 655 ACAGATAATATGGCAGCTCACACGATGAAGGAAAAGCAAATTTCTGCTGT 704
BSNT_02282___ 705 TATCGTCGGAGCCGACCGAATTGCAAAGAACGGTGATACGGCAAATAAAA 754
.||.||.|||||.||.||.|||||....||.||.|||.||||.|||||.|
BPUM_1249___m 705 CATTGTTGGAGCTGATCGTATTGCCCGTAATGGAGATGCGGCGAATAAGA 754
BSNT_02282___ 755 TCGGCACATACGGTCTTGCTGTTTTAGCAAACGC-CTTTGATATTCCGTT 803
|.|||||.|...||||||||.|||||||.|| || .|||.|.||.||.||
BPUM_1249___m 755 TTGGCACGTTAAGTCTTGCTATTTTAGCCAA-GCATTTTCAAATCCCATT 803
BSNT_02282___ 804 TTTTGTCGCCGCACCTTTATCTACATTTGATACAAAGGTC------AAAT 847
||||.|.||.|||||..|.|||||.|||||| ||| |||.
BPUM_1249___m 804 TTTTATAGCTGCACCGCTGTCTACCTTTGAT------GTCTCAACTAAAG 847
BSNT_02282___ 848 GCGGCGCTGATATCCCGATAGAGGAACGGGATCCCG-AGGAAGTCAGGCA 896
.|||..|.|||||.||.||.||.||.||.|| |||| .||||||.|.|.|
BPUM_1249___m 848 ACGGATCAGATATTCCAATTGAAGAGCGTGA-CCCGCTGGAAGTAAAGGA 896
BSNT_02282___ 897 GATTT-CCGGAGTTCGGACCGCTCCATCCAATGTGCCTGTCTTTAATCCC 945
|||| .|||.||.|..|..||.|||.|..||||.|..||.||.||||||
BPUM_1249___m 897 -ATTTAACGGCGTCCAAATTGCACCACCTGATGTTCAGGTATTCAATCCC 945
BSNT_02282___ 946 GCTTTCGACATTACACCTCATGATCTCATTTCAGGAATCATCACAGAAAA 995
||.||.||..|.||.|||||..|||||||||||||.|||||.|||||.||
BPUM_1249___m 946 GCCTTTGATGTCACTCCTCACCATCTCATTTCAGGGATCATTACAGAGAA 995
BSNT_02282___ 996 AGGGATTATGAC--CGGAAACTATGAAGAAGAGATTGAACAGCTGTTTAG 1043
|||||||||.|| || ||||||...|||||||||||....||||||
BPUM_1249___m 996 AGGGATTATCACATCG--AACTATACTGAAGAGATTGATGCCCTGTTT-- 1041
BSNT_02282___ 1044 AGGAGAAAAGGTGCAT-TAA------ 1062
|..||||| ||| |.|
BPUM_1249___m 1042 -GCTGAAAA----CATCTCACTCTGA 1062
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