Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02283 and BPUM_1250
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:44
# Commandline: needle
# -asequence dna-align/BSNT_02283___mtnK.1.24716.seq
# -bsequence dna-align/BPUM_1250___mtnK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02283___mtnK-BPUM_1250___mtnK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02283___mtnK-BPUM_1250___mtnK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02283___mtnK
# 2: BPUM_1250___mtnK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1314
# Identity: 833/1314 (63.4%)
# Similarity: 833/1314 (63.4%)
# Gaps: 237/1314 (18.0%)
# Score: 2559.5
#
#
#=======================================
BSNT_02283___ 1 ATGATGGGAGTCACAAAAACACCTTTATACGAAACGTTAAATGAAAGCTC 50
|.| ||.|||...||..|.|.|||.|||...||||..||||||||
BPUM_1250___m 1 ----TTG--GTTACACTTACGGCATCATATGAAGAATTAACAGAAAGCTC 44
BSNT_02283___ 51 CGCTGTGGCGTTGGCGGTGAAGCTTGGCCTTTTTCCAAGCAAAAGCACGC 100
.||.||.||..|.||..|.|..||||| |||..|||||| ||||||..|
BPUM_1250___m 45 GGCAGTTGCACTCGCAATTAGACTTGG-CTTGATCCAAG--AAAGCAGTC 91
BSNT_02283___ 101 ---TGACATGCCAGGAGATCGGAGACGGCAACTTAAATTACGTTTTTCAT 147
|||||||...|||.|||||.|||||.||.|||||||||||.||||||
BPUM_1250___m 92 ATTTGACATGTACGGAAATCGGTGACGGAAATTTAAATTACGTCTTTCAT 141
BSNT_02283___ 148 ATTTATGATCAAGAACATGACAGAGCATTGATCATTAAACAGGCGGTTCC 197
||||.|||.||..||||.||.|.||.||||||.||.||.|||||..||||
BPUM_1250___m 142 ATTTTTGACCATAAACAAGAAAAAGGATTGATTATCAAGCAGGCACTTCC 191
BSNT_02283___ 198 GTATGCAAAAGTGGTGGGAGAAAGCTGGCCGCTGACAATCGACCGTGCAA 247
.||.||.||||||||.|||||.||||||||.||.|||.|.||||||||.|
BPUM_1250___m 192 CTACGCCAAAGTGGTCGGAGAGAGCTGGCCACTTACATTAGACCGTGCGA 241
BSNT_02283___ 248 GAATCGAAAGCAGC-GCTCTCAT----CCGTCAGGGCGAGCATGTGCCTC 292
|.|||||||| .|| ||.||.|| |.|||| ||..||..|||.|
BPUM_1250___m 242 GGATCGAAAG-TGCTGCCCTAATCAAGCAGTCA----GAATATACGCCGC 286
BSNT_02283___ 293 ACCTGGTTCCAAGAGTGTTTTATTCTGATACGGAAATGGCCGTTACCGTC 342
||||.||.|||..|||.|.||||||.|||||.|...|.||.||.||.|..
BPUM_1250___m 287 ACCTTGTACCAGCAGTCTATTATTCAGATACAGCTCTTGCTGTGACGGCT 336
BSNT_02283___ 343 ATGGAGGATCTCTCTCACCTCAAGATCGCAAGAAAAGGACTCATTAAGGG 392
|||||||||||.||.|||||..|.||||..||||||||.||.||| |..
BPUM_1250___m 337 ATGGAGGATCTATCACACCTAGAAATCGTCAGAAAAGGGCTAATT--GCC 384
BSNT_02283___ 393 TGAAAAC--TATCCTCATCTGTCGCAGCACATCGGTGAATTTTTAGGAAA 440
.|||||| |||||.|||.|.||..|.||..||||.|||||.||||||||
BPUM_1250___m 385 GGAAAACAATATCCGCATTTATCTGATCATGTCGGAGAATTCTTAGGAAA 434
BSNT_02283___ 441 AACACTTTTCTACTCATCAGATTACGCGCTTG------AACCTAAGGTGA 484
|||||||||.|||.|.||.||.| ||| |.|||||..|.|
BPUM_1250___m 435 AACACTTTTTTACACTTCTGACT------TTGCCACAAATCCTAAAATCA 478
BSNT_02283___ 485 AAAAACAGCTTGTTAAACAGTTTACAAATCCAGAGCTTTGCGACATTACG 534
|||||||..||||.||.||.|||||.||||||||.|||||.||||||||.
BPUM_1250___m 479 AAAAACAATTTGTGAAGCAATTTACGAATCCAGATCTTTGTGACATTACC 528
BSNT_02283___ 535 GAAAGACTTGTTTTTACAGATCCTTTCTTCGACCATGA------CACAAA 578
||||..|||||.||.|||||||||||||| ||| ||||||
BPUM_1250___m 529 GAAAAGCTTGTCTTCACAGATCCTTTCTT------TGATAGCAGCACAAA 572
BSNT_02283___ 579 TGATTTTGAAGAAG----------AGCTTCGTC------CTTTTGTCGAA 612
|||||||||||||| ||| ||.| ||||.|.|
BPUM_1250___m 573 TGATTTTGAAGAAGAATTAAGAGAAGC--CGCCGAAGCGCTTTGGGC--- 617
BSNT_02283___ 613 AAGCTCTGGAATAATGACAGCGTTAAAATCGAAGCCGCTAAGCTGA---- 658
||.|||.|| |.||..||| ||||.| ||||||
BPUM_1250___m 618 -AGATCTTGA--AGTGCAAGC---AAAAGC----------AGCTGAATTG 651
BSNT_02283___ 659 AAAAGTCATTTT--TAACGTCTGCGGAAAC-GTTGATTCATGGTGATTTG 705
||..|| ||||| |.||.|||||.||||| .||| |||||||.|||.|.
BPUM_1250___m 652 AAGCGT-ATTTTCCTGACATCTGCCGAAACACTTG-TTCATGGAGATCTT 699
BSNT_02283___ 706 CATACAGGAAGCATTTTCGCAAGTGAGCAC-GAAACAAAGGTGATTGATC 754
||||||||.||.|||||.||||||||| || |||||||||.|.|||||||
BPUM_1250___m 700 CATACAGGCAGTATTTTTGCAAGTGAG-ACGGAAACAAAGATCATTGATC 748
BSNT_02283___ 755 CTGAGTTTGCTTTTTACGGACCGATCGGCTTTGATGTAGGGCAATTTATC 804
|.||.||.||||||||.||.||..||||.||.|||.|.||.||.||||||
BPUM_1250___m 749 CAGAATTCGCTTTTTATGGTCCCTTCGGATTCGATATCGGTCACTTTATC 798
BSNT_02283___ 805 GCCAACTTATTTTTGAACGC----ACTCAGCCGTGACGAGGCTGA----- 845
||||||.|.||..|.||||| .|| |||||..| |||
BPUM_1250___m 799 GCCAACCTGTTCCTAAACGCTTTGTCT----CGTGAAAA---TGAACACG 841
BSNT_02283___ 846 --CAG-AGAGCCGTTATATGAACATGTCAACCAGGTCTGGGAAACGTTTG 892
||| ||..|| |.|.|||.||||||..|.|.||.||||..||.||..
BPUM_1250___m 842 ATCAGCAGCACC--TTTTTGACCATGTCGTCAATGTATGGGCGACCTTCA 889
BSNT_02283___ 893 AAGAGACGTTTAGTG-------AAGCCTGG-CAGAAGGACAG-------- 926
|.|| |||| ||||.||| .|||| |||||
BPUM_1250___m 890 AGGA-------AGTGTTCGCAAAAGCTTGGAAAGAA-GACAGCATTGAAG 931
BSNT_02283___ 927 -----------TCTG---GATGTTTACGCCAACATCGACGGTTACCTCAC 962
|||| |.|.|||| ..|||| |||| .
BPUM_1250___m 932 CGTTTAGTGTATCTGACAGCTTTTTA--GAAACA---------ACCT--T 968
BSNT_02283___ 963 TGATACGCTCAGCCATATTTTTGAAGAAGCAATCGGATTTGCGGGCTGTG 1012
||| ||.||||||..|||||||.|..||.|||||.|||||||
BPUM_1250___m 969 TGA---------CCGTATTTTAAAAGAAGCGACAGGCTTTGCAGGCTGTG 1009
BSNT_02283___ 1013 AGCTGATACGACGCACGATCGGCCTTGCCCACGTAGCTGACCTGGATACG 1062
||||..|.||.||.|||||.||||||||.||.|..|||||.||.|||.||
BPUM_1250___m 1010 AGCTTGTCCGCCGAACGATTGGCCTTGCTCATGCCGCTGATCTTGATGCG 1059
BSNT_02283___ 1063 AT---CTTGCCGTTTGATAAACGAATT-GGCAGAAAACGTCTGGCGCTCG 1108
|| .|..||.| .||||||.||| .|||||||
BPUM_1250___m 1060 ATTCCATCACCAT---CTAAACGGATTCAGCAGAAA-------------- 1092
BSNT_02283___ 1109 AAACCGGCACAGCCTTTA---TC-GAAAAACGTTCGGAATTCA--AAACG 1152
||| |||||..||| || ||||||| ||||| ||||.
BPUM_1250___m 1093 AAA-----ACAGCACTTACGCTCGGAAAAAC-------ATTCATCAAACA 1130
BSNT_02283___ 1153 ATAACA-------------------GATGTTATTGAATTATTTAAGTTAC 1183
|||.|| ||..|..|.|.||||||..||..|.
BPUM_1250___m 1131 ATATCATGCAGTGGAAACAGCGTCTGACCTCGTCGCATTATTCCAGCAAT 1180
BSNT_02283___ 1184 TTGTAAAGGAATGA 1197
.|||||||||.|||
BPUM_1250___m 1181 CTGTAAAGGAGTGA 1194
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