Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02288 and BPUM_1253

See Amino acid alignment / Visit BSNT_02288 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:45
# Commandline: needle
#    -asequence dna-align/BSNT_02288___mtnX.1.24716.seq
#    -bsequence dna-align/BPUM_1253___mtnX.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02288___mtnX-BPUM_1253___mtnX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02288___mtnX-BPUM_1253___mtnX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02288___mtnX
# 2: BPUM_1253___mtnX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 776
# Identity:     488/776 (62.9%)
# Similarity:   488/776 (62.9%)
# Gaps:         148/776 (19.1%)
# Score: 1449.5
# 
#
#=======================================

BSNT_02288___      1 ATGACGACTCGAAAACC--TTTTATTATTTGTGATTTTGACGGAACAATC     48
                     ||||      .||||||  ||.|||  .||||||||||||.|||||.||.
BPUM_1253___m      1 ATGA------AAAAACCAATTGTAT--GTTGTGATTTTGATGGAACCATT     42

BSNT_02288___     49 ACGATGAACGACAACATTATAAATATCATGAAAACA-TTTGCTCCCCCAG     97
                     ||||..||.||.||.||.||....|||||| ||.|| |||||.||    .
BPUM_1253___m     43 ACGAAAAATGATAATATCATTCGCATCATG-AAGCACTTTGCACC----A     87

BSNT_02288___     98 AGTGGGTG------GCATTAAAAGACGGCGTACTTTCCA-AAACGCTGTC    140
                     ||||..||      ||  |.||.||||..||.||   || |||    |..
BPUM_1253___m     88 AGTGAATGGACGAAGC--TGAAGGACGATGTTCT---CACAAA----GGA    128

BSNT_02288___    141 GATCA------AGGAAGGTGTCGGGCGGATGTTCGGCCTTC---------    175
                     |||||      |.|||||.|||||||.|||||      |||         
BPUM_1253___m    129 GATCACCATTCAAGAAGGCGTCGGGCAGATGT------TTCAATTACTGA    172

BSNT_02288___    176 ----TGCCCAGCCGTTTAAAAGAAGAGATTACAAGT--TTTGTATTGGAA    219
                         ||..||       ||||||||..||| ||| |  |||.|.||.|||
BPUM_1253___m    173 AGAGTGATCA-------AAAAGAAGCCATT-CAA-TCGTTTATTTTAGAA    213

BSNT_02288___    220 GATGCAAAAATCAGGGAAGGCTTTCGGGAATTTGTAGCATTTATCAATG-    268
                     |||.||.|.||..|.|||||.||...|.||||||     ||.||| ||| 
BPUM_1253___m    214 GATACAGAGATTCGAGAAGGATTCAAGCAATTTG-----TTGATC-ATGT    257

BSNT_02288___    269 -----AGCACGAGATTCCGTTTTATGTCATAAGCGGTGGAATGGACTTTT    313
                          ||...||.|||||.||.|||||..|||||||.||.||||||||||
BPUM_1253___m    258 GAAAAAGGCTGATATTCCCTTCTATGTGCTAAGCGGCGGGATGGACTTTT    307

BSNT_02288___    314 TTGTATATCCTTTGCTTGAAGGCATTGTGGATAAAGACCGCATTTATTGC    363
                     ||||||||||..|.||.||||||||||||||.|.|||....|||||||||
BPUM_1253___m    308 TTGTATATCCCATACTCGAAGGCATTGTGGAAAGAGAGGATATTTATTGC    357

BSNT_02288___    364 AACCATGCTTCATTTGACAATGACTATATCCATATTGACTGGCCTCATTC    413
                     ||.|||||.||||||.||.|.||..||||.||.|||||.|||||.|||.|
BPUM_1253___m    358 AATCATGCCTCATTTCACGAAGAGCATATTCAGATTGAATGGCCACATGC    407

BSNT_02288___    414 CTGCAAGGGCACATGCAGCAA--TCAA------TGCGGGTGCTGTAAGCC    455
                     ||||       .||.| ||||  ||||      |||||.|||||||||||
BPUM_1253___m    408 CTGC-------GATTC-GCAATGTCAAAATGGCTGCGGATGCTGTAAGCC    449

BSNT_02288___    456 GTCGGTCATCCATGAACTTTCTGAACC----GAACCAATATATCATCATG    501
                     |||..||||.|..|||    ||||.||    |||..|.|..||.||||||
BPUM_1253___m    450 GTCAATCATTCGAGAA----CTGACCCGTGAGAATGACTTCATTATCATG    495

BSNT_02288___    502 ATCGGTGATTCGGTTACAGATGTGGAGGCAGCAAAGC-TG----TCTGAC    546
                     ||.||.|||||.||.||.|||||||||||.||||||| ||    |||.||
BPUM_1253___m    496 ATTGGAGATTCAGTCACCGATGTGGAGGCGGCAAAGCATGCGGATCTCAC    545

BSNT_02288___    547 CTATGCTTTGCAAGGGATTATTTATTAAACGAATGCCGGGAGCAAA-ACC    595
                          .|||||..|.||.||.||..|||||||||       |.||| |.|
BPUM_1253___m    546 -----ATTTGCGCGTGACTACTTGCTAAACGAAT-------GTAAAGAAC    583

BSNT_02288___    596 TCAATCATCTTCCGTATCAAGATT--------TTTATGAGATCAGAAAG-    636
                     ||...|.|.|||   ||.||||.|        ||||| .||||..|||| 
BPUM_1253___m    584 TCGGGCTTGTTC---ATAAAGAGTATGAAACATTTAT-TGATCTTAAAGC    629

BSNT_02288___    637 -GAAATTGAGAATGTAAAGGAGGTACAGGAATGGCTG--CAAAACAAGAA    683
                      .||.||||..|..|||||||.||..|||||||||.|  .||||.||.||
BPUM_1253___m    630 ACAATTTGATCAAATAAAGGAAGTGAAGGAATGGCAGACGAAAAGAACAA    679

BSNT_02288___    684 -CGCTGGCGAGAGCTCGCTGAAGTAA    708
                      |||||||..|||||.|         
BPUM_1253___m    680 GCGCTGGCAGGAGCTAG---------    696


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