Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_02290 and BPUM_1255

See Amino acid alignment / Visit BSNT_02290 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:45
# Commandline: needle
#    -asequence dna-align/BSNT_02290___ykrZ.1.24716.seq
#    -bsequence dna-align/BPUM_1255___mtnZ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02290___ykrZ-BPUM_1255___mtnZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02290___ykrZ-BPUM_1255___mtnZ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02290___ykrZ
# 2: BPUM_1255___mtnZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 557
# Identity:     393/557 (70.6%)
# Similarity:   393/557 (70.6%)
# Gaps:          46/557 ( 8.3%)
# Score: 1300.5
# 
#
#=======================================

BSNT_02290___      1 ATGGCTACAATTCGAATTCATGATGAGGCAAATACA--ACGATTGAAA--     46
                     |||||.||.|||...||||||.||||.|..||||||  ||  ||||||  
BPUM_1255___m      1 ATGGCGACGATTTTGATTCATAATGAAGAGAATACATTAC--TTGAAAGC     48

BSNT_02290___     47 -ATCAAGAGGAAGTGGCAAGCTTTCTGGACAGTCAAGAGGTTATTTATGA     95
                      |.||||||   ||||||..||.|.|.||.|..||||.|||.||||||||
BPUM_1255___m     49 GAACAAGAG---GTGGCAGCCTATTTAGAAAACCAAGGGGTCATTTATGA     95

BSNT_02290___     96 GCAATGGGATATCATG--AAGCTTCCGGAAC--ATCTCTCAGAGAAATAT    141
                     .||.||||||||  ||  |||||.|| .|||  || |.|||||.||.|||
BPUM_1255___m     96 ACATTGGGATAT--TGCAAAGCTGCC-AAACCGAT-TATCAGAAAAGTAT    141

BSNT_02290___    142 GACCTGACAGAAGAAGAAAAACAGCAAATTCTTGA-TACCTTCGAAACTG    190
                     ||..|.|||||.||||||||..|..|.||| |||| |...|||.|||..|
BPUM_1255___m    142 GATTTAACAGATGAAGAAAAGGACGAGATT-TTGACTGTTTTCCAAAAGG    190

BSNT_02290___    191 AAATTAAAGA-TATCTC-----AACCCGCCGCGGCTATAAAGCACAGGAT    234
                     ||| |..||| |||.||     ||     ||.||.||.|||.||||||||
BPUM_1255___m    191 AAA-TCGAGAGTATATCAGAGAAA-----CGAGGGTACAAATCACAGGAT    234

BSNT_02290___    235 GTTATTTCATTGTCAGACAGCAATCCGAAACTTGATGAACTGCTTGAAAA    284
                     ||.||||||||.||.||...||..||.||.||.|||||.|||||..||||
BPUM_1255___m    235 GTGATTTCATTATCTGATGCCACACCAAACCTAGATGACCTGCTCCAAAA    284

BSNT_02290___    285 CTTTAAAAGAGAGCATCACCATACAGACGATGAGGTTCGTTTTATTGTAA    334
                     .|||.|..|.|||||||||||||||||.||.||.||.|||||||||||||
BPUM_1255___m    285 TTTTCAGCGTGAGCATCACCATACAGATGACGAAGTCCGTTTTATTGTAA    334

BSNT_02290___    335 GCGGACACGGTATTTTTGTCATTCAAGGCAAGGACGGCACGTTTTTTGAT    384
                     |.||.||.||.||.||||.|||||||||.|||||.|||...|||||||||
BPUM_1255___m    335 GTGGTCATGGAATCTTTGCCATTCAAGGGAAGGATGGCGTCTTTTTTGAT    384

BSNT_02290___    385 GTCCGTTTAAACCCTGGAGATTTAATCTCCGTGCCTGAGA----ATATCC    430
                     ||..|..|.|||||.||.||||||||.||.||.||    |    ||||.|
BPUM_1255___m    385 GTAAGACTGAACCCAGGCGATTTAATTTCTGTTCC----ACCACATATTC    430

BSNT_02290___    431 GCCATTACTTCACGCTTCAGGAGGACCGCAAAGTTGTCGCGGTGAGAATT    480
                     |.||.|||||.||.|||||.|||||.||.|||||.|||.|.||..|.||.
BPUM_1255___m    431 GTCACTACTTTACACTTCAAGAGGATCGAAAAGTGGTCTCAGTTCGCATA    480

BSNT_02290___    481 TTTGTCACAACTGAAGGCTGGGTTCCGATTTATGAAAAAGACAGCGTGAA    530
                     ||||||||||||||.||||||||.||.|||||.||..||||.|..||   
BPUM_1255___m    481 TTTGTCACAACTGAGGGCTGGGTGCCAATTTACGAGGAAGAAACGGT---    527

BSNT_02290___    531 TCAATAA    537
                     |.||   
BPUM_1255___m    528 TTAA---    531


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.