Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02292 and BPUM_1256

See Amino acid alignment / Visit BSNT_02292 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:45
# Commandline: needle
#    -asequence dna-align/BSNT_02292___spo0E.1.24716.seq
#    -bsequence dna-align/BPUM_1256___spo0E.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02292___spo0E-BPUM_1256___spo0E.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02292___spo0E-BPUM_1256___spo0E.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02292___spo0E
# 2: BPUM_1256___spo0E
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 302
# Identity:     148/302 (49.0%)
# Similarity:   148/302 (49.0%)
# Gaps:         103/302 (34.1%)
# Score: 312.5
# 
#
#=======================================

BSNT_02292___      1 ----ATGGGCGGTTCTTCTG-AACAAGAAAG--ATTGTTGGTGTCTATTG     43
                         ||.|       ||.|| ||.||.|.||  ||||.|..||||.||||
BPUM_1256___s      1 ATGAATAG-------TTATGTAAGAAAAGAGCAATTGCTAATGTCAATTG     43

BSNT_02292___     44 ATGAAAAAAGAAAGTTAATGATAGATGCCGCTAGAAAGCAG--GGATTTA     91
                     |.||.||.|||||....|||.||||.||.|||  .||||||  ||.|..|
BPUM_1256___s     44 ACGAGAAGAGAAAACAGATGGTAGAAGCTGCT--CAAGCAGAAGGCTACA     91

BSNT_02292___     92 CAGGGCATGACACG---ATCAGGCACAGTCAGGAGCTGGA----TTGTTT    134
                     |.||   |||.|||   ||.|...|.|||||.||.|||||    .||   
BPUM_1256___s     92 CTGG---TGAGACGACAATTAAATATAGTCAAGAACTGGACAACCTG---    135

BSNT_02292___    135 AATAAATGAATATC---ACCAGCTTATGCAAGAAAACGAACATTC-----    176
                      ||.|||||.||||   |.|..|||.|.||.||.|   ||||.||     
BPUM_1256___s    136 -ATGAATGAGTATCAGTATCTCCTTTTTCATGAGA---AACAATCTGCCC    181

BSNT_02292___    177 ---CCAAGGGATTCAAGGCCTTGTAAAG-----AAATTAGGCT------T    212
                        ||     .||||.|...||||         ||||.||.||      |
BPUM_1256___s    182 CCTCC-----TTTCATGATTTTGT----CTCTCAAATGAGTCTGCTATCT    222

BSNT_02292___    213 GTG------GCCCCGCAGAGATGTTATGCCAGCATATGATGCAAATAAAT    256
                     |||      |||         |.||||         |||           
BPUM_1256___s    223 GTGAACCGTGCC---------TCTTAT---------TGA-----------    243

BSNT_02292___    257 AG    258
                       
BPUM_1256___s    243 --    243


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