Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02294 and BPUM_1257

See Amino acid alignment / Visit BSNT_02294 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:45
# Commandline: needle
#    -asequence dna-align/BSNT_02294___kinD.1.24716.seq
#    -bsequence dna-align/BPUM_1257___kinD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02294___kinD-BPUM_1257___kinD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02294___kinD-BPUM_1257___kinD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02294___kinD
# 2: BPUM_1257___kinD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1601
# Identity:    1022/1601 (63.8%)
# Similarity:  1022/1601 (63.8%)
# Gaps:         193/1601 (12.1%)
# Score: 2880.5
# 
#
#=======================================

BSNT_02294___      1 TTGAAAATACTAAAAGGCGCCTGCGGGAGA--GTCAAACTTTATATCATA     48
                     .|||..|||||.||||  |.||..||.|||  .|||..||.||..|.||.
BPUM_1257___k      1 ATGAGTATACTGAAAG--GGCTTTGGAAGAAGATCAGGCTGTACCTTATT     48

BSNT_02294___     49 CTGGTCGTGATTCCGGCAATCGTCATCAGCTTTTTCGTATATGAAAAAGA     98
                     .|||||.|||||||..|..|..||||.||.|.|||..|.||.||||||||
BPUM_1257___k     49 TTGGTCATGATTCCAACCCTAATCATTAGTTATTTTATCTACGAAAAAGA     98

BSNT_02294___     99 AAAAGATACAATAGCTGCAGAACATAAACAAGAAGCAAGTGTCCTGCTAA    148
                     ||..||.|.|||.|.|..|.||.|.||||||...||.|...|..||.|||
BPUM_1257___k     99 AACGGAAAAAATTGATTTAAAAAACAAACAAACTGCTACACTTATGTTAA    148

BSNT_02294___    149 ACCTTCACCGCAACAAAATCAATTATTTAATCGGAGAAACAATGGCGAGA    198
                     |..|||||...|||.||||.|||||||||||..|.||||||...||.|||
BPUM_1257___k    149 ATATTCACAAAAACCAAATGAATTATTTAATTAGTGAAACAGAAGCAAGA    198

BSNT_02294___    199 ATGACCTC-CTTGTCCATCGCCATCGAC----------AGACCGGTTGAT    237
                     .|.||.|| |||| ||||.|...|.|||          ||||     || 
BPUM_1257___k    199 TTAACTTCACTTG-CCATGGGATTTGACCAGCCTCTCAAGAC-----GA-    241

BSNT_02294___    238 ATAAAG---AAAATGCAGTCAATTTTGGAAAAGACCTTTGATTCAGAGCC    284
                     |.||||   ||||       .||..|.||.||.|.||.|.|...|||.||
BPUM_1257___k    242 AAAAAGTACAAAA-------CATCCTAGAGAAAATCTATAAACAAGAACC    284

BSNT_02294___    285 GAGATTTTCCGGTCTCTATTTTCT---CAATGCCAAAGGAGACGTCACCG    331
                     ..|.|||||.|||||.|||.|.||   |||   .||||||.|.||.||.|
BPUM_1257___k    285 TCGTTTTTCAGGTCTGTATCTCCTAGACAA---AAAAGGAAATGTAACAG    331

BSNT_02294___    332 CAAGCACAACCGAATTAAA--AACGAAAGTAAACCTGGCCGACAGATCTT    379
                     ..|||||.||...||||||  ||  |||.|.|||||..|...||||..||
BPUM_1257___k    332 TTAGCACCACACCATTAAAGGAA--AAAATTAACCTATCATTCAGAGATT    379

BSNT_02294___    380 TTTTTACAAAAGCA---AAG-GAAACTAAAAAGACAGTCATTTCAGATAG    425
                     ..|||  ||..|||   ||| |  ||.||..||||.||.||..||||||.
BPUM_1257___k    380 ACTTT--AAGCGCATTCAAGTG--ACCAAGCAGACGGTGATCACAGATAA    425

BSNT_02294___    426 TTATTCGAGCAGAATTACTGGTCAGCCAATTTTCACAATTTGTGTCCCTG    475
                     ||||..||||.|||||||....||||..|||.|..|.||||||||.||||
BPUM_1257___k    426 TTATGTGAGCCGAATTACAAAACAGCGGATTCTTTCCATTTGTGTGCCTG    475

BSNT_02294___    476 TTTCGGACTCAAAACGTA-ATGTGACAGATTATCTTGTCGCAGCTATTCA    524
                     |...||| |.||||||.| |.||.||..||...||.|||||.||.|||||
BPUM_1257___k    476 TGCTGGA-TGAAAACGAAGAAGTCACCAATGTGCTAGTCGCCGCCATTCA    524

BSNT_02294___    525 AATTGATTATTTGAAAAATCTCATTAACTTGCTGAGCCCTGATGTTTATA    574
                     ||||||||||||.|.||||.|.||.||..|..|||.|||||||.||.|| 
BPUM_1257___k    525 AATTGATTATTTAAGAAATATAATGAATGTATTGAACCCTGATCTTCAT-    573

BSNT_02294___    575 TTGAAGTTG-TGAACCAAGACGGGAAAATGATT---TTTGCGAGCGG---    617
                     ||..||.|| ||||.|||.|.||  |.||| ||   |||.|.||.||   
BPUM_1257___k    574 TTTCAGATGCTGAATCAAAATGG--ACATG-TTGTGTTTACAAGTGGTCC    620

BSNT_02294___    618 ACAAGCCTCTCATGCAGAGGATCAGAAA----------CCTGTCAGCGGA    657
                     ||||.|           ||.||||||||          ..||||..|  |
BPUM_1257___k    621 ACAACC-----------AGCATCAGAAAATGGTAGCACTGTGTCTAC--A    657

BSNT_02294___    658 TATCTGGATGATATCAGCTGGAATATGAAAGTCTATCCG-AACCCGGT--    704
                     |||.|.|||||.|.|||||||||..||.|.||||||||| |.|.||.|  
BPUM_1257___k    658 TATTTAGATGAAAACAGCTGGAAGCTGGAGGTCTATCCGCAGCGCGCTTC    707

BSNT_02294___    705 CACAATAGAAGAACTGAC-GAAAAGCCTAGTGCT--TCCGCTTT---CA-    747
                     .|||...||||..|||.| |       |..||||  ||| ||||   || 
BPUM_1257___k    708 TACAGGTGAAGTGCTGTCTG-------TTATGCTGATCC-CTTTATCCAG    749

BSNT_02294___    748 TG-TATTATTGTTCTGCTGAATATCCTTTTTATT----CTCGTGC--TGT    790
                     || |.||||| ||.|  |.||||    |||||||    ||.||.|  |.|
BPUM_1257___k    750 TGCTTTTATT-TTAT--TAAATA----TTTTATTCACACTTGTTCAATAT    792

BSNT_02294___    791 ATTATTTGCTGAAGCGGCAGACCCAGCTGGAGCGCTCA-GAAAACGAGGC    839
                     ||.||||  |.|.||||||.|||||||.|||.|| ||| .||||.||.||
BPUM_1257___k    793 ATCATTT--TAAGGCGGCAAACCCAGCAGGAACG-TCACCAAAATGAAGC    839

BSNT_02294___    840 GCAAAAATTAGAACTGATCGGGACGCTTGCTGCCAGCACAGCCCATGAAA    889
                     ||||||..|.|||.|.|||||.||.||.||.||.||.||.||.|||||||
BPUM_1257___k    840 GCAAAAGCTTGAATTAATCGGAACCCTCGCAGCAAGTACGGCACATGAAA    889

BSNT_02294___    890 TCCGTAACCCTCTT-ACCGGCATAAGCGGCTTTATTCAGCTGTTGCAAAA    938
                     |.||.||||| ||| ||.||.||.||.||.|||||.|||||.||||||||
BPUM_1257___k    890 TTCGCAACCC-CTTAACAGGGATTAGTGGTTTTATACAGCTTTTGCAAAA    938

BSNT_02294___    939 GAAATATAAAGGTGAAGAGGATCAGCTTTACTTCTCCATTATCGAACAGG    988
                     |||.|||.|...||||||.||||||||.||.||.||..|.||.|||.|.|
BPUM_1257___k    939 GAAGTATCACTCTGAAGAAGATCAGCTCTATTTTTCTGTCATTGAAGAAG    988

BSNT_02294___    989 AGATAAAGCGCATCAATCAAATAGTGAGTGAGTTTCTCGTTCTCGGCAAG   1038
                     |.||.||.||.||.||.|||||.||.|||||||||||.||..|.||.||.
BPUM_1257___k    989 AAATTAAACGAATTAACCAAATCGTCAGTGAGTTTCTTGTATTAGGGAAA   1038

BSNT_02294___   1039 CCGACAGCTGAAAAATGGGAGCTGAACTCACTTCAGGACATTATCGGAGA   1088
                     ||.|||||.|||||||||.||...|||||..|..|.||.|||.|..|.||
BPUM_1257___k   1039 CCAACAGCAGAAAAATGGCAGAATAACTCTGTAAAAGAAATTGTAAGTGA   1088

BSNT_02294___   1089 AATTATGCCGATCATTTATTCTGAGGGCAATCTATACAATGTTGAAGTCG   1138
                     .||.|||||||||.|||..|||||||..||.||.||.||||||||.||.|
BPUM_1257___k   1089 GATCATGCCGATCGTTTTCTCTGAGGCGAACCTGTATAATGTTGAGGTTG   1138

BSNT_02294___   1139 AATTGCAGTATTTAACCGAGCAGCCCTTAC---TCGTAAAATGT------   1179
                     |..||||  |.||||            |||   ||  ||.||||      
BPUM_1257___k   1139 ATCTGCA--AATTAA------------TACAATTC--AAGATGTTGGGGT   1172

BSNT_02294___   1180 -------ACAAAAGATCATATTAAACAAGTGATTTTAAATGTAGCAAAAA   1222
                            |||||.|||||||||||||||||..|.||||||||.||.||.|
BPUM_1257___k   1173 CTATTGCACAAAGGATCATATTAAACAAGTTGTATTAAATGTTGCGAAGA   1222

BSNT_02294___   1223 ATGGCCTCGAGTCAATGCCTGAAG-GAGGCAAACTAACG---ATTTCCCT   1268
                     |    |||  ||.|      |||| ||.||.||.|..||   ||||    
BPUM_1257___k   1223 A----CTC--GTTA------GAAGCGATGCCAAATGGCGGTCATTT----   1256

BSNT_02294___   1269 GGGAGCTTTAGAT---------AAAA----AAGCCATAATCAAAGTTGTG   1305
                      |.||.|||.|||         ||||    |.|.|||.||.|||||....
BPUM_1257___k   1257 -GAAGATTTTGATTGAGGCTGAAAAAGACCATGTCATTATTAAAGTGAAA   1305

BSNT_02294___   1306 GATAACGGTGAAGGGATTTCTCAGGAAATGCTGGATCACATCTTCCTTCC   1355
                     ||||..||.||.||.||.....|.||||||.|..|.||.||||||||.||
BPUM_1257___k   1306 GATACAGGCGAGGGCATACAAGAAGAAATGTTAAAACATATCTTCCTCCC   1355

BSNT_02294___   1356 CTTTGTTACTTCTAAAGAAAAAGGAACCGGGCTCGGCCTTGTTGTTTGTA   1405
                     .|||.||||.||.||.|||||||||||.||.||.||.|||||.||.||||
BPUM_1257___k   1356 TTTTATTACGTCGAAGGAAAAAGGAACAGGTCTTGGACTTGTCGTGTGTA   1405

BSNT_02294___   1406 AACGGATCGTGCTGATGTACGGAGGCTCTATTCATATTGAAAGTGAAGTG   1455
                     ||||.|||.|...||||||.||.||..|.|||.||||.||.||.||||||
BPUM_1257___k   1406 AACGAATCATTTCGATGTATGGCGGAACAATTGATATCGAGAGCGAAGTG   1455

BSNT_02294___   1456 CGAAGAGGCACAAAGGTGACAATCACCCTCCC--CGTATC-CGCATCATA   1502
                     ...|.|||.||||..||.|..||||..||.||  |...|| |.||.||||
BPUM_1257___k   1456 AATAAAGGAACAACTGTCATGATCATGCTTCCTTCTGCTCACTCAGCATA   1505

BSNT_02294___   1503 G   1503
                     |
BPUM_1257___k   1506 G   1506


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