Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02301 and BPUM_1261
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:46
# Commandline: needle
# -asequence dna-align/BSNT_02301.1.24716.seq
# -bsequence dna-align/BPUM_1261___clpE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02301-BPUM_1261___clpE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02301-BPUM_1261___clpE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02301
# 2: BPUM_1261___clpE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2194
# Identity: 1333/2194 (60.8%)
# Similarity: 1333/2194 (60.8%)
# Gaps: 491/2194 (22.4%)
# Score: 4598.5
#
#
#=======================================
BSNT_02301 0 -------------------------------------------------- 0
BPUM_1261___c 1 ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACAATTCGCCTGAATAT 50
BSNT_02301 0 -------------------------------------------------- 0
BPUM_1261___c 51 GCAAGTGAATTCATCCCGGAGCCAAATGGTTTTATGTGAAGACTGCTACA 100
BSNT_02301 0 -------------------------------------------------- 0
BPUM_1261___c 101 CCTCTTTGATGGAGCAATCAAAAATGAAAATGGGACCTCAATTGTTCGGA 150
BSNT_02301 0 -------------------------------------------------- 0
BPUM_1261___c 151 GGAAGCTCATTCTTCTCTGAGCAAGCAGGACATACGCAAAACGTAGAGCA 200
BSNT_02301 0 -------------------------------------------------- 0
BPUM_1261___c 201 GCCAAAGCATAAAGGCTTACTCGATGAACTTGGCCGAAATTTAACAGATG 250
BSNT_02301 0 -------------------------------------------------- 0
BPUM_1261___c 251 GCGCGAATGCTGGTTTAATTGATCCAGTCATCGGCCGTGATGAAGAAGTC 300
BSNT_02301 1 ------GTGATCGAAATTCTAAACCGCCGGAACAAAAACAATCCGGTTCT 44
||.||.||.|||.||||..|..|.||.|||||||||||.||.||
BPUM_1261___c 301 GCAAGAGTCATTGAGATTTTAAATAGAAGAAATAAAAACAATCCCGTCCT 350
BSNT_02301 45 TATTGGTGAGCCGGGTGTAGGGAAAACTGCCATCGCTGAAGGGCTCGCTT 94
.||||||||.||.|||||.||||||||.||.||.||||||||.||.||..
BPUM_1261___c 351 CATTGGTGAACCAGGTGTTGGGAAAACAGCGATTGCTGAAGGACTTGCAC 400
BSNT_02301 95 TAAAAATTGCTGAA--GGTGATGTTCCAAACAAACTGAAAAACAAAGAGC 142
|.|||||||| || ||.|||||.|||||.|||.|.||.||||||.|..
BPUM_1261___c 401 TGAAAATTGC--AAGTGGCGATGTACCAAATAAATTAAAGAACAAACAAA 448
BSNT_02301 143 TATATTTGCTTGATGTTGCATCCCTTGTTGCAAACACAGGGATCAGAGGC 192
|.|||||..|.|||||..|.||||||||.||.||||||||.||..|.||.
BPUM_1261___c 449 TCTATTTATTAGATGTCTCGTCCCTTGTCGCGAACACAGGAATACGTGGT 498
BSNT_02301 193 CAATTTGAGGAGAGAATGAAACAGCTGATCACTGAGCTG--AAGGAACGA 240
|||||||||||.||||||||.|||.|.||.|..||..|| ||| .||.
BPUM_1261___c 499 CAATTTGAGGAAAGAATGAAGCAGTTAATTAAAGAATTGCAAAG--CCGT 546
BSNT_02301 241 AAAAATGTCATTCTGTTCATT----GATGAAATTCACCTTCTCGTCGGCG 286
|||||| |||.|.|| ||| |||||||||||.|||||.||.||||
BPUM_1261___c 547 AAAAAT---ATTATCTT-ATTTGTAGATGAAATTCATCTTCTTGTAGGCG 592
BSNT_02301 287 CAGGCTCTGCAGAAGGATCAATGGACGCCGGCAACATTCTCAAACCGGCC 336
||||.|||||.|||||.||||||||.||.||.|||||..|.|||||.|||
BPUM_1261___c 593 CAGGGTCTGCCGAAGGGTCAATGGATGCTGGAAACATCTTAAAACCAGCC 642
BSNT_02301 337 CTAGCCAGAGGCGAACTGCAAGTCATTGGTGCGACAACACTGAAAGAATA 386
||.||..|||||||.||.||..|..|.||||||||.|||.|.||||||||
BPUM_1261___c 643 CTTGCACGAGGCGAGCTCCAGCTAGTAGGTGCGACGACATTAAAAGAATA 692
BSNT_02301 387 TCGTCAAATCGAAAAAGATGCCGCGCTGGAAAGACGTTTTCAGCCTGTCA 436
|||||||||.||||||||||||||.||.|||.|.||.||.|||||.||||
BPUM_1261___c 693 TCGTCAAATTGAAAAAGATGCCGCACTTGAACGGCGCTTCCAGCCCGTCA 742
BSNT_02301 437 TGGTGCAGGAGCCTTC---AATTGAACAGGCTATCCTCATTCTGCAAGGG 483
|.||..|.|||||..| |..|||| ||.|||...|||.|..||||.
BPUM_1261___c 743 TTGTAGATGAGCCAACACAAGCTGAA---GCAATCGAGATTTTAAAAGGC 789
BSNT_02301 484 ATTAAAGACAAATACG-AGGCATACCATGGCGTAAC--ATTCAGTGATGA 530
|||.||||.||.||.| |.|| |||||||||.|.|| ||||| ||.||
BPUM_1261___c 790 ATTCAAGATAAGTATGAAAGC-TACCATGGCATCACCTATTCA--GACGA 836
BSNT_02301 531 AGCAATCAAAGCATGTG-TCACTTTATCATCCCGCTACATTCAGGACAGA 579
|||.||..||||.|||| ||| .|||||.||.||.||.||.||||||.|.
BPUM_1261___c 837 AGCGATTCAAGCGTGTGTTCA-ATTATCTTCACGGTATATCCAGGACCGT 885
BSNT_02301 580 CACCTGCCGGATAAAGCAATTGATTTATTAGATGAAGCAGGTTCAAAAGC 629
||..|||||||||||||.|||||||||.|.|||||||||||||||||.||
BPUM_1261___c 886 CATTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAGGC 935
BSNT_02301 630 CAACCTGTTAATTGATG----AACTGAATGATGAGGATGCCGCTGAA--- 672
.|||||.|..||||||| ||.|||| ||||| .|| ||
BPUM_1261___c 936 GAACCTCTCCATTGATGCCGCAAGTGAA-GATGA-------ACT-AACAA 976
BSNT_02301 673 --CGCTTAACTGCAATTGAAGCCGAAAAAACAAAAGCCCTGG-------- 712
|||.|.|.||.|||||..||.|||||| |.||
BPUM_1261___c 977 ATCGCCTGAGTGAAATTGCTGCTGAAAAA---------CAGGCTGCTTTA 1017
BSNT_02301 713 -AAGAAGAAAATTACGAACTTGCGGCAAAACTCCGTGATGAAGAACTCG- 760
||||||||.|.||||||...||.|||||.||.||.|||||||||...|
BPUM_1261___c 1018 AAAGAAGAACAATACGAAAAAGCAGCAAAGCTTCGAGATGAAGAAGAAGC 1067
BSNT_02301 761 CATTGGAGAA-------AAAACTGAACAGCTC-CTCCGCTCATACCGCTG 802
|||||.||.| |||||..||||..|| |...|..||| |..|
BPUM_1261___c 1068 CATTGAAGCAAGACTTCAAAACAAAACAAATCACAAAGAACAT---GTCG 1114
BSNT_02301 803 TCACTGTGGAAGCTGAGCACATTCAGGAAATTGTTGAACAAAAAACAGGC 852
|||| |||.||..|||||||.|..|||||.|||||||||||||||
BPUM_1261___c 1115 TCAC------AGCAGAAGACATTCAAGCCATTGTCGAACAAAAAACAGGC 1158
BSNT_02301 853 ATCCCTGTCGGCAAACTGCAGGCAGACGAACAAACGAAAATGAAAGAACT 902
||||||||.|||||||||||.||||||||||||||.||||||||||||.|
BPUM_1261___c 1159 ATCCCTGTTGGCAAACTGCAAGCAGACGAACAAACCAAAATGAAAGAAAT 1208
BSNT_02301 903 CGAAG------CAAAACTTCATGAACGCGTGATTGGACAAGAAGCCGCTG 946
.||.| .|||| |.|||.|||||.||.||.|||...||.|
BPUM_1261___c 1209 TGACGTCCGCTTAAAA------GCACGAGTGATCGGTCAGGAACATGCGG 1252
BSNT_02301 947 TTCAAAAAGTGGCAAAGGCGGT-AAGACGAAGCCGCGCCGGTTTAAAATC 995
||.|||||||.|||||.||.|| |||| ||||..|.|||||.||||||||
BPUM_1261___c 1253 TTGAAAAAGTCGCAAAAGCTGTGAAGA-GAAGTAGAGCCGGCTTAAAATC 1301
BSNT_02301 996 CAAAAACAGACCAGTCGGCTCCTTCCTCTTCGTCGGTCCTACCGGCGTAG 1045
.|||.|.||||||...|||||||||||.|||||.||.||.||.||.||.|
BPUM_1261___c 1302 AAAACATAGACCAACTGGCTCCTTCCTATTCGTTGGACCAACAGGTGTTG 1351
BSNT_02301 1046 GGAAAACAGAGCTTTCTAAAACACTGGCAGATGAATTATTCGGCACAAAA 1095
|||||||.||..|.||.|||||.||.||.||.||||||||.||..||..|
BPUM_1261___c 1352 GGAAAACCGAATTATCAAAAACGCTAGCTGAAGAATTATTTGGTTCACGA 1401
BSNT_02301 1096 GACGCTATTATCCGACTCGATATGAGCGAATACATGGAGAAACACGCCGT 1145
||.||.||.|||||..|.||||||||.||.|||||||||||||||.|.||
BPUM_1261___c 1402 GAGGCGATCATCCGTTTAGATATGAGTGAGTACATGGAGAAACACTCAGT 1451
BSNT_02301 1146 ATCTAAAATTATCGGTTCACCGCCTGGATATGTCGGCCATGAGGAAGCTG 1195
||||||..|.||||||||.||.|||||.|||||.||.|||||.|||||.|
BPUM_1261___c 1452 ATCTAAGCTCATCGGTTCTCCACCTGGTTATGTTGGACATGATGAAGCAG 1501
BSNT_02301 1196 GACAATTAACTGAGAAAGTGCGCCGCAATCCTTACAGCATTGTGTTGCTG 1245
|.|||.|.||.||.|||||||||.|.||.||.||||||||..|.||||||
BPUM_1261___c 1502 GTCAACTGACAGAAAAAGTGCGCAGAAAACCATACAGCATCATTTTGCTG 1551
BSNT_02301 1246 GATGAGATTGAAAAAGCACACCCAGACGTTCAGCATATGTTCCTGCAAAT 1295
|||||.||.||||||||||||||.||.||.|||||.||||||||.|||||
BPUM_1261___c 1552 GATGAAATCGAAAAAGCACACCCTGATGTGCAGCACATGTTCCTTCAAAT 1601
BSNT_02301 1296 TATGGAGGATGGCCGTCTGACAGACAGCCAAGGCAGAACTGTAAGCTTCA 1345
.|||||.||||||||..|.|||||||||||||||||||||||.|||||.|
BPUM_1261___c 1602 CATGGAAGATGGCCGGTTAACAGACAGCCAAGGCAGAACTGTCAGCTTTA 1651
BSNT_02301 1346 AAGACACAGTGATCATCATGACAAGTAATGCGGGTGCTGGTGAGAAACAA 1395
||||.|||||.|||||||||||||||||.||.| ||.|...|||.| ||
BPUM_1261___c 1652 AAGATACAGTCATCATCATGACAAGTAACGCAG--GCAGCACAGATA-AA 1698
BSNT_02301 1396 ACG---AAAGTCGGTTTCCAATCAGATGACAG-----TGTCATCGAAGAA 1437
||| ||||||||.|||||.||.||| ||| .|..|||||.|||
BPUM_1261___c 1699 ACGGTTAAAGTCGGCTTCCAGTCTGAT--CAGGAAGAAGCAATCGAGGAA 1746
BSNT_02301 1438 CAAACATTGATTGATTCACTGAGC----ATGTTCTTTAAACCTGAGTTCC 1483
|||.||.|.|||||||||||.||| || ||.|||||.||.|||.
BPUM_1261___c 1747 CAATCACTCATTGATTCACTCAGCGCCTAT----TTCAAACCAGAATTCT 1792
BSNT_02301 1484 TCAACCGTTTTGACAGCATTATTGAGTTCCGCTCATTGGAAAAAGAACAT 1533
|.|||||||||||||||||.|||.||||...|||.||.||...|||..||
BPUM_1261___c 1793 TGAACCGTTTTGACAGCATCATTCAGTTTGACTCCTTAGATCGAGATGAT 1842
BSNT_02301 1534 CTTGTCAAAATCGTCAG-CCTTCTTCT---TGGAG----------AACTT 1569
.|.||.||.||.|| || .|||||.|| | ||| ||.|.
BPUM_1261___c 1843 TTAGTGAAGATTGT-AGATCTTCTGCTCAAT-GAGCTGTCAGCACAATTA 1890
BSNT_02301 1570 GAAGA--AACATTGGCTGAACGGGGCATTAGCTTGAATGTGACAGATGAA 1617
.|||| ||.|| |.|||.| |..||||||||.|.|||
BPUM_1261___c 1891 AAAGAGCAAAAT----TTAACAG----------TCCATGTGACAAAAGAA 1926
BSNT_02301 1618 GCGAAAGAAAAAATCGCTGAGCTGGGCTACCACCCTTCATTCGGTGCACG 1667
||||||||||||||.||.||.||.||.||.||.|||.||||.|||||.||
BPUM_1261___c 1927 GCGAAAGAAAAAATTGCAGAACTTGGATATCATCCTGCATTTGGTGCTCG 1976
BSNT_02301 1668 TCCGCTTAGAAGAACCATCCAAGAATGGGTTGAGGATGAAATGACCGATC 1717
|||.||..||||||||||.|||||....|||||.|||.|||||||.||..
BPUM_1261___c 1977 TCCACTGCGAAGAACCATTCAAGAGCACGTTGAAGATCAAATGACGGAGA 2026
BSNT_02301 1718 TGCTGCTTGATAATGGCGAGATCACAAGTTTTCACGTGATTT-------- 1759
|..||||||| |||..|.|||.|||.| .|||||
BPUM_1261___c 2027 TATTGCTTGA--------AGAAGATAAGCTTTTA--GGATTTACTGTAGA 2066
BSNT_02301 1760 --TAGAAGATGATAAAA-------TCAAAGTGCAAGCGAAATAA 1794
|.||||||.|..||| |.||| ||| .||||
BPUM_1261___c 2067 TGTTGAAGATAACGAAATTGTCGTTAAAA----AAG---GATAA 2103
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