Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02326 and BPUM_1277
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:47
# Commandline: needle
# -asequence dna-align/BSNT_02326___ykvZ.1.24716.seq
# -bsequence dna-align/BPUM_1277.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02326___ykvZ-BPUM_1277.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02326___ykvZ-BPUM_1277.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02326___ykvZ
# 2: BPUM_1277
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1147
# Identity: 632/1147 (55.1%)
# Similarity: 632/1147 (55.1%)
# Gaps: 299/1147 (26.1%)
# Score: 1575.0
#
#
#=======================================
BSNT_02326___ 1 ATGGCTAATATTAAAGACATTGCAGAAAAAGCCGGTGTCTCTGTTACAAC 50
|||||.||.||.|..||.||||||.|||.|||.||.||.|||||.|||||
BPUM_1277 1 ATGGCAAACATAAGGGAGATTGCAAAAAGAGCGGGCGTATCTGTGACAAC 50
BSNT_02326___ 51 GGTTTCCCGAGTCATAAACAATCATCCATACGTCAGTGAAGACAAACGAA 100
.||.||.||.||..|.||..|||||||.||.||||..|||||.||||||.
BPUM_1277 51 TGTATCACGTGTGTTGAATCATCATCCTTATGTCAAAGAAGAAAAACGAG 100
BSNT_02326___ 101 AAAGAGTGTTTGAGGCAATGGAA----TCATTGGAGTACACGAGAAATAT 146
||.|.||..||||.||.|||.|| ||| |.||.||||||||.||
BPUM_1277 101 AACGTGTTCTTGATGCGATGAAAGAGCTCA----AATATACGAGAAACAT 146
BSNT_02326___ 147 TCACGCTGTACATTTGTCGAAAGGATTTTCAAACATGATTGGTGTTG-TC 195
|||.|||||.|||||..|.|||||.|.||||||.|||.||||..|.| ||
BPUM_1277 147 TCAGGCTGTTCATTTAGCCAAAGGTTATTCAAATATGCTTGGCATCGTTC 196
BSNT_02326___ 196 TTGCCAACGGTTAATCTGCCATATTT-TGCAGAGCTG--------ATTGC 236
|| ||||||.||.|||...|.||||| .|||||..|| |||||
BPUM_1277 197 TT-CCAACGATTGATCATTCTTATTTCAGCAGACTTGTCACAGGTATTGC 245
BSNT_02326___ 237 AGGAATAGCCGATGCAGCCGCGGAATCCGGGGTTCACCTCTCTTTATTCC 286
||.||.||| .|||.|||| |||..|.||..|.|||||.||.|
BPUM_1277 246 AGAAAAAGC----ACAGGCGCG-----CGGTATGCATTTTTCTTTGTTTC 286
BSNT_02326___ 287 AAACAAACTATGAGGTACA--AAAAGA-----AATCTTTGCGCTGTCCCA 329
|||||...||||| |.|| |||||| ||.|.|||....||
BPUM_1277 287 AAACAGGATATGA--TCCATTAAAAGAAAAAGAAGCATTGATGAGT---- 330
BSNT_02326___ 330 ATTAAAGCAGCGCCAGGTTGACGGCCTGATTTTTTGCTCAAAGGCGCTTG 379
|||||..||||||..||.||.||..|.||.|||||||||||.||..|..
BPUM_1277 331 -TTAAAAGAGCGCCGCGTGGATGGATTAATCTTTTGCTCAAATGCATTAA 379
BSNT_02326___ 380 CTGA-TGAGA-AACTCATGGAATGGGAG------GGCCCGATTTTGCTTT 421
.||| .|||| |..|||.|| |||.|| ||.||.|||.|..|||
BPUM_1277 380 GTGACCGAGACATTTCAAGG--TGGCAGGAATTCGGGCCTATTATTTTTT 427
BSNT_02326___ 422 GCCAGAATTCAGATAATGCCCG--------------CTTCCCAACC--AT 455
|||| |||| ||.|.||||| ||
BPUM_1277 428 GCCA--------------CCCGGTGCCAAGTGAAAACTGCTCAACCGTAT 463
BSNT_02326___ 456 CAGTATTCCTCACCAAGAAGCATTT-CGGAACGGCTTGGACTATTTAATT 504
| .|||.|.||..|..|||||||| ..||| ||.||..|..|||||...
BPUM_1277 464 C--GATTGCGCATGATCAAGCATTTAAAGAA-GGGTTACATCATTTAGCA 510
BSNT_02326___ 505 GCCAAAGGGCACA--AAAAAATAGCCATCTGT--TTGGCAAGAAAAAAAG 550
|| |.|.|.||| |...|||.||.|| ||| || ||.||||.|.|||
BPUM_1277 511 GC--ATGCGGACATCAGCGAATTGCGAT-TGTCCTT-GCCAGAATAGAAG 556
BSNT_02326___ 551 GCATGAACAGTCATTTTCGAATCAAAGCCTA-CAAAGAGGCATTGGAAGA 599
|||..|||||.||.|..||..|..||||.|| |||| .||| ||.|.
BPUM_1277 557 GCACAAACAGCCAGTCGCGCCTTCAAGCTTATCAAA---ACAT--GATGC 601
BSNT_02326___ 600 GATC-----GGCGAGGCATTTCGTGAAGACTGGGTAATTGAGAAAGCGAT 644
|||| ||| |||...||..||||||.|||
BPUM_1277 602 GATCGCTCGGGC-AGGAGATTGATGAAGAATGG----------------- 633
BSNT_02326___ 645 TACAATCAATGATGGGAAG---GCGCTTTTTCATAAATGGAAAAC----- 686
||||.|||.|||||| .|.|||||| .|||||||||
BPUM_1277 634 ----ATCATTGAAGGGAAGCTAACACTTTTT----GATGGAAAACAATTA 675
BSNT_02326___ 687 --------GTGGAAGGAA----AAG------CCGACGGCTATT-TTTGTT 717
||||.| ||| ||| ||.||.|| ||| ||..|.
BPUM_1277 676 TTTGCAGAGTGGCA-GAAGATGAAGAATCGCCCCACAGC-ATTATTCATC 723
BSNT_02326___ 718 GCCAATGACCAAGTCTCAGCAGGGCTTTTTCTTGAAG------------- 754
.|.|||||..|.||.|||||| ||||||||.||..||
BPUM_1277 724 ACAAATGATGACGTATCAGCA-GGCTTTTTATTAGAGGCGCAACGTCATG 772
BSNT_02326___ 755 ----CAAAGAA---------CCAGCGGGTGTCAGTAC-CGGATGAGCTTG 790
|||||.| ||||| || ||| || ||||.
BPUM_1277 773 ATATCAAAGTAGGTGAATCTCCAGC------CA-TACTCG-----GCTTT 810
BSNT_02326___ 791 CAATCTTAAGCGTTGATAACCACGAAATCAGCCAAGCGCTT-GGAATCAC 839
||| || |||| .||.|.||..|.|||||| |||.|..|
BPUM_1277 811 CAA----AA----TGAT------CAATTGAGTGAGGCGCTTAGGATTTCC 846
BSNT_02326___ 840 AACGATCGATATT---CAGACAAGGGAAATGGGAAAGCAGGCATTTGCCA 886
|.| ||.|||||| |.||.|.| |||||||.||.|.||.||||.|.
BPUM_1277 847 AGC-ATTGATATTCCGCTGAAACG---AATGGGACAGGAAGCGTTTGACT 892
BSNT_02326___ 887 TACTGGA-------AAAAAGAATTCAAGGA--CAGCCGATTGAAAGGAAA 927
|..|.|| |.|||| ..||| ||.|.|| ||||.|||
BPUM_1277 893 TGTTCGACCAGGCCATAAAG-----GGGGAGGCACCAGA--GAAAAGAA- 934
BSNT_02326___ 928 GTTCTG-GATTACCGTCTCATCGAAAGATCGACT---GTTTAG------- 966
|.||| .||| .||.||.||||||.||||.||| ||||..
BPUM_1277 935 -TGCTGCCATT-TCGCCTGATCGAACGATCAACTACCGTTTTCAAAAACA 982
BSNT_02326___ 966 ----------------------------------------------- 966
BPUM_1277 983 ATTCGTTGACGCACGTTTCATCTGTTTTGTACGATAAGAGGGATTGA 1029
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