Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02328 and BPUM_1278
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:47
# Commandline: needle
# -asequence dna-align/BSNT_02328___glcT.1.24716.seq
# -bsequence dna-align/BPUM_1278___glcT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02328___glcT-BPUM_1278___glcT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02328___glcT-BPUM_1278___glcT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02328___glcT
# 2: BPUM_1278___glcT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 921
# Identity: 609/921 (66.1%)
# Similarity: 609/921 (66.1%)
# Gaps: 120/921 (13.0%)
# Score: 1950.5
#
#
#=======================================
BSNT_02328___ 1 ATGACAAAGGAGCTGAGGATCGTGAATGG-GTCCTTCACAG-TGAAAAAG 48
|| ||..|||| .||||||||.| |||.||||
BPUM_1278___g 1 ------------------AT-GTTCATGGAATCCTTCACCGTTGATAAAG 31
BSNT_02328___ 49 -GTACTGAATAATAACGTATTAATTGCTTCTCATCATAAATACA------ 91
|| |.||||||||.||..|.||||| ||.|||
BPUM_1278___g 32 CGT--TAAATAATAATGTCATCATTGC-----------AAGACACCCTTC 68
BSNT_02328___ 92 -----GCGAAGTCGTTTTAATCGGAAAAGGTATTGGTTTCGGAAAAAAAC 136
|||||||.|||.|.||.||.|||||.||.||.||||||||||||.
BPUM_1278___g 69 TTTGGGCGAAGTAGTTCTGATAGGGAAAGGGATCGGCTTCGGAAAAAAAT 118
BSNT_02328___ 137 AAGATGATG---TCATTGAAGATAAAGGCTACGATAAAATGTTCAT--TT 181
..|.||||| ||..|.||||||.| |..||.||||||||..| ||
BPUM_1278___g 119 CGGGTGATGTTCTCGATCAAGATACA---TTTGAAAAAATGTTTGTCCTT 165
BSNT_02328___ 182 TAAAAGACGAGAAGGAACAAA-AGCAATTTAAAAAGCTCCTTGACTATGT 230
.||||.|| .|||||||||| || |||.||||.||||.|||.||.|..|
BPUM_1278___g 166 AAAAATAC--AAAGGAACAAACAG-AATATAAACAGCTGCTTCACCACAT 212
BSNT_02328___ 231 TGATGAAAAGCTCGTTGATATTTCAAACGATGTCATCTATCACAT----- 275
||||||.||..|..|.||..||.|.||.||.|||||.|||||.||
BPUM_1278___g 213 TGATGAGAACATGATCGAGCTTGCCAATGACGTCATTTATCATATACGAG 262
BSNT_02328___ 276 AAGAAATAGGACTAATCACTCATTAAATGAACATATTCACATTGCGTTGA 325
||.||||.||| |||...||.|||||.||||||||.|||||..|||
BPUM_1278___g 263 AAAAAATGGGA-----CACCGTTTGAATGAGCATATTCATATTGCCCTGA 307
BSNT_02328___ 326 CAGACCATATCGCATTT--------GCGA-TCAAAAGGCAGCAGCAGGGA 366
|.||||||||.||.||| |||| | ||||||.|||
BPUM_1278___g 308 CTGACCATATTGCCTTTAGTTTTAAGCGAGT---------GCAGCAAGGA 348
BSNT_02328___ 367 TTTGATATGAAAAATCCATTTCTAATGGAGACTCAGTCACTATATCCTGA 416
|.||||||.|..|||||.|||.|..|.|||||..||||.||.|||||..|
BPUM_1278___g 349 TATGATATCACCAATCCCTTTATGCTTGAGACGAAGTCGCTGTATCCGAA 398
BSNT_02328___ 417 GGAGTACCAAATTGCCAAAGAAGTCATAGATATGATCAA---------TG 457
.||.||..|..|.||.||.|||||..|.||..|.||.|| ||
BPUM_1278___g 399 AGAATATGAGGTCGCAAAGGAAGTTGTTGAGCTAATTAACAAACGCCCTG 448
BSNT_02328___ 458 A----AAAAGCGGGAATCTGCCTTCCGGAAGGGGAGATTGGTTTTATCGC 503
| |||| ..||.||| ||.|||||.||||||||||||||.||
BPUM_1278___g 449 ATGTCAAAA---CAAAGCTG----CCAGAAGGAGAGATTGGTTTTATTGC 491
BSNT_02328___ 504 TCTGCATATCCATTCAGCATTGACAAACCGTCCGCTGTCCGAGGTCAATC 553
.||.|||||.||.|||||.||.||.||.||.||..|.||.|||||.||||
BPUM_1278___g 492 GCTCCATATTCACTCAGCTTTAACGAATCGGCCATTATCTGAGGTGAATC 541
BSNT_02328___ 554 AGCACTCTCAGCTCATGGCGCAGCTTGTCGAGGTGATTGAAGACTCATTT 603
..||.||.||||||||..|.||..|.|||.|.||.||.|||||.||||||
BPUM_1278___g 542 GTCATTCGCAGCTCATCACACAAATGGTCCAAGTCATAGAAGATTCATTT 591
BSNT_02328___ 604 CAAATGAAAGTAAATAAGGAAAGTGTCAACTATTTGCGGCTGAT--CAGG 651
||.|||||||||.|.|..||||||.|..|.|||||.| |||.|| | |.
BPUM_1278___g 592 CATATGAAAGTAGACAGAGAAAGTATTCATTATTTAC-GCTTATTGC-GC 639
BSNT_02328___ 652 CATATCAGATTTACAATAGAAAGAATTAAAAAAGAAGAACCGACTA-AAG 700
|||||.|.||||.|.||.||..|.||||||...||||||.| ..|| |.|
BPUM_1278___g 640 CATATTACATTTTCGATTGAGCGTATTAAACGGGAAGAATC-TTTAGAGG 688
BSNT_02328___ 701 AACCAGAAAAA----TTAATGTTGTTATTGAAAAATGAATATCCGCTATG 746
|.||||||||| ||.|| .|||||||||||||||||||..||||
BPUM_1278___g 689 AGCCAGAAAAATTGCTTCAT----CTATTGAAAAATGAATATCCTTTATG 734
BSNT_02328___ 747 CTACAATACAGCTTGGAAATTGATTAAAATCTTGCAGCAAACATTGAAGA 796
|||||||||.|||||||||.||||.|||||.||.||.||..|||||||.|
BPUM_1278___g 735 CTACAATACTGCTTGGAAAATGATCAAAATATTACAACATGCATTGAAAA 784
BSNT_02328___ 797 AACCAGTTCATGAGGCGGAAGCGGTTTATCTGACGCTTCATCTGTACCGA 846
|.||.||.||.||.||.||.||.||.||.|||||.||||||||||||.||
BPUM_1278___g 785 AGCCTGTACAGGATGCAGAGGCTGTCTACCTGACACTTCATCTGTACAGA 834
BSNT_02328___ 847 TTAACCAATAAAATTTCATAA 867
||.||.||||||||||||||.
BPUM_1278___g 835 TTGACAAATAAAATTTCATAG 855
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