Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02331 and BPUM_1281
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:48
# Commandline: needle
# -asequence dna-align/BSNT_02331___ptsI.1.24716.seq
# -bsequence dna-align/BPUM_1281___ptsI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02331___ptsI-BPUM_1281___ptsI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02331___ptsI-BPUM_1281___ptsI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02331___ptsI
# 2: BPUM_1281___ptsI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1738
# Identity: 1346/1738 (77.4%)
# Similarity: 1346/1738 (77.4%)
# Gaps: 44/1738 ( 2.5%)
# Score: 5147.0
#
#
#=======================================
BSNT_02331___ 1 ATGCAAGAATTAAAAGGGATTGGCGCTTCAGCCGGCATCGCGATTGCAAA 50
||||||.||.|.|||||.||.||.||||||||.|||.|.|||||||||||
BPUM_1281___p 1 ATGCAACAACTGAAAGGAATCGGTGCTTCAGCAGGCGTTGCGATTGCAAA 50
BSNT_02331___ 51 AGCATACCGGCTTGAAGAGCCAGATTTAACGGTTGAAAAGAAAAACATCT 100
||||||.||.||.|||||.|||||||||||.|||.|..|.|||.|||||.
BPUM_1281___p 51 AGCATATCGTCTGGAAGAACCAGATTTAACAGTTCACCAAAAAGACATCA 100
BSNT_02331___ 101 CTGATTCTGAAGCGGAAGT-AAGCCGTTTTGATGAAGCGATTGCACG-TT 148
.||||.|.||..|.||||| ||| ||||||||.|||||.||| ||.| ||
BPUM_1281___p 101 ATGATCCAGAGACAGAAGTGAAG-CGTTTTGAAGAAGCAATT-CATGTTT 148
BSNT_02331___ 149 CAAAAGAAGAGCTCGAAAAAATCAAAGAGCACGCTTTGAAAGAACTGGGT 198
|.|||.||||.||.|||..|||.|||||.||.||..|.|||||.||.||.
BPUM_1281___p 149 CTAAACAAGAACTTGAAGCAATTAAAGAACATGCGCTAAAAGAGCTTGGC 198
BSNT_02331___ 199 CAGGATAAAGCTGATATTTTTTCTGCTCACCTTTTAGTTCTCAGTGACCC 248
||.||.|||||.||||||||||||||.||||||.|.||..|.|||||.||
BPUM_1281___p 199 CAAGACAAAGCAGATATTTTTTCTGCACACCTTCTTGTGTTAAGTGATCC 248
BSNT_02331___ 249 TGAGCTTCTGAACCCTGTGAAAGAAAAAATCAGCACTGATTCAGTGAACG 298
.|||||.||.|||||.||.||.||.|||||||.|.|||||..|||.||.|
BPUM_1281___p 249 AGAGCTGCTAAACCCAGTAAAGGATAAAATCAACTCTGATAAAGTAAATG 298
BSNT_02331___ 299 CTGAATTCGCTTTAAAAGAAACGTCTTCTATGTTCGTTACCATGTTTGAA 348
|||||||.||||||||||||||..|..|.|||||.||.||.|||||.|||
BPUM_1281___p 299 CTGAATTTGCTTTAAAAGAAACAGCAACAATGTTTGTCACGATGTTCGAA 348
BSNT_02331___ 349 TCTATGGACAACGAATATATGAAAGAGCGTGCGGCAGATATCCGCGATGT 398
.|.||||||||.|||||.|||||.||.|||||.||.|||||.|||||.||
BPUM_1281___p 349 GCAATGGACAATGAATACATGAAGGAACGTGCAGCGGATATTCGCGACGT 398
BSNT_02331___ 399 AACAAAACGCGTAACCGGCCACCTGCTTGGCGTGGAAATTCCAAACCCAA 448
|||||||||.|||||.||.||..||||.|||||.||.||.||.||.||||
BPUM_1281___p 399 AACAAAACGTGTAACTGGACATTTGCTAGGCGTTGACATCCCGAATCCAA 448
BSNT_02331___ 449 GCATGATCTCAGAAGAGGTTATTATTGTAGCTGAAGACTTAACACCGTCT 498
|||||||.||.|||||.||.||.||..|.||||||||.|||||.||.|||
BPUM_1281___p 449 GCATGATTTCTGAAGAAGTCATCATCATTGCTGAAGATTTAACTCCTTCT 498
BSNT_02331___ 499 GACACAGCCCAATTAAACCGTGAGTTCGTAAAAGGATTCACTACTGATAT 548
||.||.||.||.||.|||.|..|.||.||.|||||.||..|.||.|||||
BPUM_1281___p 499 GATACTGCTCAGTTGAACAGACAATTTGTCAAAGGTTTTGCGACAGATAT 548
BSNT_02331___ 549 CGGCGGACGCACATCTCACTCTGCCATCATGGCACGTTCTCTTGAGATTC 598
|||.||.||.||.||||||||.||.||.||||||.|.||..|.|||||||
BPUM_1281___p 549 CGGAGGTCGTACTTCTCACTCAGCGATTATGGCAAGATCAATGGAGATTC 598
BSNT_02331___ 599 CGGCAGTTGTTGGAACGAAAGCGGCTACAGGCACGATCCAAAACGGCG-- 646
|.||.|||||||||||.||||..||.||| |||||.|.|
BPUM_1281___p 599 CAGCTGTTGTTGGAACAAAAGAAGCAACA----------AAAACAGTGAA 638
BSNT_02331___ 647 ------TGACTGTTATC---GTTGACGGTATCAATGGCGATGTCATTATT 687
||| |.|.||| ||.||.|||||.|..||.||.|||||.|||
BPUM_1281___p 639 AAACAATGA-TCTAATCATTGTGGATGGTATTAGCGGAGACGTCATCATT 687
BSNT_02331___ 688 GACCCATCTGCGGA--AACTGTAAAAGAGTATGAAGAAAAACATAATGCT 735
.|.||.||||..|| || ||.||||.||||.||.||||.|||.|.|..
BPUM_1281___p 688 CAGCCTTCTGAAGATGAA--GTGAAAGCGTATCAAAAAAAGCATGAAGAC 735
BSNT_02331___ 736 TATTTGGCTCAAAAAGCTGAGTGGGCGAAGCTTGTCAATGAACCGACTGT 785
||.||.|||||||||||.||.||||||||.|||||..||.|.||.||.||
BPUM_1281___p 736 TACTTAGCTCAAAAAGCAGAATGGGCGAAACTTGTTGATCAGCCAACGGT 785
BSNT_02331___ 786 CTCAAAAGATGGACATCATGTAGAGCTTGCAGCGAACATCGGTACTCCTG 835
|.|||||||.||...|||.||||||||.||.||.||.|||||.||.||||
BPUM_1281___p 786 CACAAAAGACGGCGTTCACGTAGAGCTAGCTGCAAATATCGGAACACCTG 835
BSNT_02331___ 836 ATGATGTAAAAGGTGTTCTTGAAAACGGCGGAGAAGCAGTTGGCCTTTAC 885
|.||||||||||||||.||||||||.|||||.|||||||||||..|.|||
BPUM_1281___p 836 AAGATGTAAAAGGTGTACTTGAAAATGGCGGCGAAGCAGTTGGATTGTAC 885
BSNT_02331___ 886 CGTACAGAATTCCTTTACATGGGAAGAGATCAGCTGCCTACAGAAGATGA 935
|||||.|||||..|.||||||||.|||||||||||.|||||||||||.||
BPUM_1281___p 886 CGTACTGAATTTTTATACATGGGCAGAGATCAGCTTCCTACAGAAGAAGA 935
BSNT_02331___ 936 GCAGTTTGATGCTTACAAAACGGTTCTTGAGCGTATGGAAGGAAAATCAG 985
||||||.|||||.||.|||||||||.|.|||...||||||||.|||.|||
BPUM_1281___p 936 GCAGTTCGATGCGTATAAAACGGTTTTAGAGAAAATGGAAGGCAAAGCAG 985
BSNT_02331___ 986 TCGTCGTGCGGACACTTGATATCGGCGGAGACAAAGAGCTTCCTTACCTG 1035
|.||.||.||.|||||.|||||.||.||.||.|||||.||.||||||.||
BPUM_1281___p 986 TGGTTGTCCGCACACTAGATATTGGTGGCGATAAAGAACTACCTTACTTG 1035
BSNT_02331___ 1036 CAGCTTCCTAAAGAAATGAACCCGTTCCTGGGATATAGAGCGATTCGTCT 1085
||.|||||.||||||||||||||||||||.||.|||||||||||.||.||
BPUM_1281___p 1036 CAACTTCCAAAAGAAATGAACCCGTTCCTTGGCTATAGAGCGATCCGCCT 1085
BSNT_02331___ 1086 TTGCCTTGAAGAGCAAGAAATCTTCAGAACACAGCTTCGCGCGCTGCTTC 1135
||||||||||||.||.||.||.|||||||||||.||.|||||..|.||||
BPUM_1281___p 1086 TTGCCTTGAAGAACAGGAGATTTTCAGAACACAACTACGCGCCTTACTTC 1135
BSNT_02331___ 1136 GTGCAAGTACATACGGAAACTTGAAAATCATGTTCCCTATGATTGCGACA 1185
|||||||||||||.|||||||||||||||||||||||||||||.|||||
BPUM_1281___p 1136 GTGCAAGTACATATGGAAACTTGAAAATCATGTTCCCTATGATCGCGAC- 1184
BSNT_02331___ 1186 GTTAAC-GAATTCAAAGAAGCAAAAGCGATCCTTCTTGAAGAGAAAGAAA 1234
||||.| |||||.|.||||||||||||.||..|.||||||||.|||| |
BPUM_1281___p 1185 GTTATCTGAATTTAGAGAAGCAAAAGCTATTTTACTTGAAGAAAAAG--A 1232
BSNT_02331___ 1235 AGC--TCGTAAAAGC-GGGACAGGCTGTATCTGACGATATTGAAGTCGGA 1281
||| |.||....|| ||.||||.| ||.|||||....||||||.|||||
BPUM_1281___p 1233 AGCATTGGTTGCCGCTGGTACAGAC-GTTTCTGATTCCATTGAAATCGGA 1281
BSNT_02331___ 1282 ATGATGGTTGAGATTCCGTCAACTGCAGTCATCGCTGATCAGTTTGCTAA 1331
||||||||.||.|||||.||||||||.||||||||.||.||.|||||.||
BPUM_1281___p 1282 ATGATGGTGGAAATTCCATCAACTGCTGTCATCGCAGACCAATTTGCAAA 1331
BSNT_02331___ 1332 AGAGGTTGATTTCTTCAGTATCGGAACAAACGATTTGATCCAATACACAA 1381
|||.|||||||||||||||||.|||||.||.||.|||||.||||||||||
BPUM_1281___p 1332 AGAAGTTGATTTCTTCAGTATTGGAACGAATGACTTGATTCAATACACAA 1381
BSNT_02331___ 1382 TGGCAGCTGACCGTATGAATGAACGTGTATCTTACCTGTATCAGCCATAC 1431
||||.|||||.||.|||||.|||||.||.|||||.||.||.|||||.|||
BPUM_1281___p 1382 TGGCTGCTGATCGAATGAACGAACGAGTGTCTTATCTTTACCAGCCTTAC 1431
BSNT_02331___ 1432 AACCCGGCAATCCTTCGCTTAATTACACTGGTAATTGAAGCAGCACACAA 1481
||.||.||.||..|.||..|.|||||.||.||.|||||||||||.||.||
BPUM_1281___p 1432 AATCCAGCCATTTTACGTCTCATTACGCTTGTTATTGAAGCAGCGCATAA 1481
BSNT_02331___ 1482 AGAAGGAAAATGGGTTGGCATGTGCGGAGAAATGGCAGGAGACGAGATTG 1531
||||||.||||||||||||||||||||.||.|||||||||||.||.||.|
BPUM_1281___p 1482 AGAAGGTAAATGGGTTGGCATGTGCGGTGAGATGGCAGGAGATGAAATCG 1531
BSNT_02331___ 1532 CGATTCCAATCCTTCTCGGCTTAGGCTTAGATGAGTTCTCAATGAGCGCA 1581
|.|||||..|.||.||.||.|||||.||||||||.|||||||||||||||
BPUM_1281___p 1532 CCATTCCTCTTCTACTTGGATTAGGATTAGATGAATTCTCAATGAGCGCA 1581
BSNT_02331___ 1582 ACGTCTATCCTTCCGGCAAGAACACAAATCAGCAAATTGTCTAAACAAGA 1631
||.|||||.|||||.||||||||.||..|.|||||..|.|||||..||||
BPUM_1281___p 1582 ACATCTATTCTTCCAGCAAGAACTCAGCTAAGCAAGCTTTCTAAGGAAGA 1631
BSNT_02331___ 1632 AGCTGAGTCATTCAAAGAGAAAATCTTATCTATGAGCACGACAGAAGAAG 1681
|||||..|||||.||||||.|.||.|||||..|.||||||||||||||||
BPUM_1281___p 1632 AGCTGCATCATTTAAAGAGCATATTTTATCACTTAGCACGACAGAAGAAG 1681
BSNT_02331___ 1682 TTGTCGCGTTCGTAAAAGAAAC-ATTCAA-GTAA---- 1713
|.||.|..||||||||..|||| .||||| .|||
BPUM_1281___p 1682 TGGTTGATTTCGTAAAGAAAACGTTTCAACATAACTAA 1719
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