Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02333 and BPUM_1283

See Amino acid alignment / Visit BSNT_02333 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:48
# Commandline: needle
#    -asequence dna-align/BSNT_02333___splB.1.24716.seq
#    -bsequence dna-align/BPUM_1283___splB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02333___splB-BPUM_1283___splB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02333___splB-BPUM_1283___splB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02333___splB
# 2: BPUM_1283___splB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1038
# Identity:     784/1038 (75.5%)
# Similarity:   784/1038 (75.5%)
# Gaps:          18/1038 ( 1.7%)
# Score: 2910.0
# 
#
#=======================================

BSNT_02333___      1 ATGCAGAACCCATTTGTTCCGCAGCTTGTATATATAGAACCGAGGGCGCT     50
                     |||...||.||.|||||.||.||||||||.||.||.|||||..|.||..|
BPUM_1283___s      1 ATGATCAAACCTTTTGTACCCCAGCTTGTGTACATTGAACCACGTGCATT     50

BSNT_02333___     51 GGAATATCCGCTAGGCCAAGAATTACAAGAAAAATTTGAGAATATGGGCA    100
                     .||.||.|||.||||.|.|||..|..|.|||||.||.|||..||||||.|
BPUM_1283___s     51 AGAGTACCCGTTAGGACGAGAGCTGAAGGAAAAGTTCGAGGGTATGGGGA    100

BSNT_02333___    101 TTGAAATCAGAGAAACAACATCCCACAATCAGGTGCGTAATATTCCTGGG    150
                     |||||||.||||||||.||.||.||.||.||.||..|.||||||||.||.
BPUM_1283___s    101 TTGAAATAAGAGAAACGACTTCACATAACCAAGTAAGAAATATTCCGGGT    150

BSNT_02333___    151 AAAAATCATCTT-CAGCAATATCGCAATGCGAAATCAACTTTAGTTATCG    199
                     ||||||.| ||| ||..|.|||||.|||||.||||||||..|.||.||.|
BPUM_1283___s    151 AAAAATGA-CTTACAAAAGTATCGTAATGCAAAATCAACGCTTGTCATTG    199

BSNT_02333___    200 GTGTCCGGAAAACATTAAAGTTTGATTCATCCAAACCCTCGGCTGAATAT    249
                     ||||..|||||||.||.|||||.|||.|.||.|||||.|||||.||||||
BPUM_1283___s    200 GTGTGAGGAAAACGTTGAAGTTCGATACGTCTAAACCATCGGCAGAATAT    249

BSNT_02333___    250 GCCATTCCGTTTGCAACAGGCTGCATGGGGCATTGTCATTACTGCTACCT    299
                     ||||||||.|||||.|||||.||.|||||.|||||||||||.||||||.|
BPUM_1283___s    250 GCCATTCCATTTGCGACAGGATGTATGGGTCATTGTCATTATTGCTACTT    299

BSNT_02333___    300 GCAAACAACCATGGGATCAAAGCCGTATATCAGAACTTATGTAAACGTCG    349
                     ||||||.||.||||||...|||||.||.||..||||.||||||||.||.|
BPUM_1283___s    300 GCAAACGACGATGGGAAGTAAGCCATACATTCGAACCTATGTAAATGTTG    349

BSNT_02333___    350 AAGAGATTTTGGATCAGGCAGATAAGTATATGAAGGAGCGCGCACCAGAG    399
                     ||||.||.||.|||||.||.||..||||.|||||.|||||.||.|||||.
BPUM_1283___s    350 AAGAAATATTAGATCAAGCGGAGCAGTACATGAACGAGCGTGCGCCAGAT    399

BSNT_02333___    400 TTCACAAGGTTCGAAGCATCATGTACGTCAGACATTGTAGGAATTGATCA    449
                     .|||||||.||.|||||.||.|||||||||||.|||||.||||||||.||
BPUM_1283___s    400 ATCACAAGATTTGAAGCTTCTTGTACGTCAGATATTGTCGGAATTGACCA    449

BSNT_02333___    450 TCTGACACACACGCTGAAGCGCGCCATTGAACATTTTGGTCAAAGTGATC    499
                     |.||||||||||..|.||..|.||.||||||.|.||.|||||.|.|||||
BPUM_1283___s    450 TTTGACACACACATTAAAAAGAGCAATTGAATACTTCGGTCAGACTGATC    499

BSNT_02333___    500 TCGGAAAGCTCCGATTTGTAACGAAATTTCATCATGTCGATCACCTATTA    549
                     |.||.|||||.||.|||||.||.||||||||||||||||||||..||.|.
BPUM_1283___s    500 TTGGTAAGCTTCGTTTTGTGACCAAATTTCATCATGTCGATCATTTACTT    549

BSNT_02333___    550 GACGCAAAGCATAA----CGGGAAAACGAGATTCAGATTCAGTATTAATG    595
                     ||.|||||||||||    |||    ||.||||||.|.||.||.||.||||
BPUM_1283___s    550 GATGCAAAGCATAATGGCCGG----ACAAGATTCCGCTTTAGCATCAATG    595

BSNT_02333___    596 CCGACTATGTGATTAAAAACTTTGAGCCGGGAACTTCACCTCTTGATAAG    645
                     |.||.|||||.||||||.|.||.||.||.||.||.|||||..|.|||.|.
BPUM_1283___s    596 CGGATTATGTCATTAAATATTTCGAACCTGGTACATCACCGTTAGATCAA    645

BSNT_02333___    646 CGGATAGAGGCGGCAGTAAAAGTTGCAAAAGCAGGCTACCCGCTAGGCTT    695
                     |||||.||.|||||.||.||.|||||.||||||||.||.|||||.|||||
BPUM_1283___s    646 CGGATTGAAGCGGCTGTCAAGGTTGCGAAAGCAGGTTATCCGCTTGGCTT    695

BSNT_02333___    696 TATTGTTGCTCCGATTTATATTCATGAAGGCTGGGAAGAAGGATACAGAC    745
                     ||||.||||.||.|||||.||.||.|||||||||.|.|||||.||.|.|.
BPUM_1283___s    696 TATTATTGCCCCAATTTACATCCACGAAGGCTGGCAGGAAGGGTATAAAG    745

BSNT_02333___    746 ATCTGTTTGAAAAGCTTGATGCTGCTTTGCCGCAGGACGTTAGACATGAC    795
                     .|||.|||||||||||.|||||.|||.|.||..||||.||.|||||.||.
BPUM_1283___s    746 TTCTTTTTGAAAAGCTCGATGCAGCTCTTCCTGAGGATGTGAGACACGAT    795

BSNT_02333___    796 ATAACGTTTGAATTAATTCAACACCGTTTTACAAAACCGGCCAAACGAGT    845
                     ||.||.||||||.|.||.||.||.||||||||||||||.||.||.||.||
BPUM_1283___s    796 ATCACCTTTGAAATGATCCAGCATCGTTTTACAAAACCAGCGAAGCGTGT    845

BSNT_02333___    846 GATAGAGAAAAATTATCCGAAGACGAAGCTCGAATTAGATGAAGAAAAGC    895
                     |||..|.|||||.||||||||..|.||..|.|||.|||||||||||||..
BPUM_1283___s    846 GATTCAAAAAAACTATCCGAAATCAAAATTAGAACTAGATGAAGAAAAAA    895

BSNT_02333___    896 GCCGTTATAAATGGGGACGCTACGGGATCGGAAAATATATATATCAGAAA    945
                     |.||.||.||.|||||..|.||.||.||.||.||||||||.|||||.|||
BPUM_1283___s    896 GACGATACAAGTGGGGTAGATATGGAATTGGGAAATATATCTATCAAAAA    945

BSNT_02333___    946 GATGAAGAGCATGCACTTCGAGAAGCACTTGAATCCTATATTGA----TA    991
                     |||||.|||||.|.|||..||.|..|..|.|||||.|||||.||    ||
BPUM_1283___s    946 GATGAGGAGCAAGAACTAAGACAGACGTTAGAATCATATATCGATCAGTA    995

BSNT_02333___    992 CCTTTTTCCCTAACGCGAAAATTGAATATTTCACTTAA   1029
                     |    ||.||.||.||.||||||||||||||.||||||
BPUM_1283___s    996 C----TTTCCGAATGCAAAAATTGAATATTTTACTTAA   1029


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