Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02342 and BPUM_1290
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:49
# Commandline: needle
# -asequence dna-align/BSNT_02342___kinA.1.24716.seq
# -bsequence dna-align/BPUM_1290___kinA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02342___kinA-BPUM_1290___kinA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02342___kinA-BPUM_1290___kinA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02342___kinA
# 2: BPUM_1290___kinA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1952
# Identity: 1267/1952 (64.9%)
# Similarity: 1267/1952 (64.9%)
# Gaps: 244/1952 (12.5%)
# Score: 3762.0
#
#
#=======================================
BSNT_02342___ 1 GTGGAACAGGATACGCAGCATGTTAAACCA-CTTCAAACAAAAACCGATA 49
.|||||||..|.|.|.|..|| |..||.|| |||.|..|.||.|.||||.
BPUM_1290___k 1 ATGGAACAAAAAATGAAAGAT-TCGAATCAGCTTTATTCGAATATCGATT 49
BSNT_02342___ 50 TTCATGCAG-TCTTGGCCTCTAATGGACGCATCATTTATATATCTGCCAA 98
|.|||||.| |||| .|.||.|||||.|||.|..|.||.||.|||.|.||
BPUM_1290___k 50 TACATGCCGTTCTT-TCTTCCAATGGCCGCTTTCTCTACATTTCTTCTAA 98
BSNT_02342___ 99 CTCCAAACTGCATTTGGGCTATCTCCAAGGAGAGATGATCGGATCATTCC 148
||..||.|.||.||||..||||...|||...||..|..|.||.|..||..
BPUM_1290___k 99 CTGTAAGCAGCTTTTGCTCTATGAACAAAAGGATTTACTAGGGTGTTTTT 148
BSNT_02342___ 149 TCAAA-ACGTTTCTGCATGAGGAAGACCAATTTTTGGTTGAAAGCTATTT 197
|.||| || |||.|.|||...|||||.||||||.|.||.||.||.|||||
BPUM_1290___k 149 TGAAAGAC-TTTGTTCATACCGAAGATCAATTTCTTGTCGAGAGTTATTT 197
BSNT_02342___ 198 TTATAATGAACATCAT-CT---GATGCCGTGCACCTTTCGTTTTATTAAA 243
|||.|||.|.|| ||| || ||| .|||..||||.|..|..|||.|
BPUM_1290___k 198 TTACAATCAGCA-CATGCTAGAGAT---TTGCCACTTTAGGCTGCTTAGA 243
BSNT_02342___ 244 AAAGATCATACGATTGTGTGGGTGGAGGCTGCGGTA--GAAATTGTTAC- 290
|..||||..||...|||.|||.|.|||||| .||| ||..|||||.|
BPUM_1290___k 244 AGTGATCTAACAGCTGTATGGATTGAGGCT--AGTATTGATTTTGTTGCT 291
BSNT_02342___ 291 -GACAAGAGCTGAGCGGACAG------AA--CGGGAAATCATTTTGAAAA 331
|..|.||||| .||||| || .|.|||||.||..|.||||
BPUM_1290___k 292 TGTGATGAGCT----AGACAGTGAATTAAGTAGAGAAATGATCCTAAAAA 337
BSNT_02342___ 332 TGAAGGTTCTTGAAG---------AAGAAACAGGCCATCAATCCCTAAAC 372
|||.|||.||.||.| ||.||.||| |||
BPUM_1290___k 338 TGAGGGTGCTGGACGCTGAACCGCAAAAAGCAG--CAT------------ 373
BSNT_02342___ 373 TGCGAAAAACAT--GAAAT---CGAAC--------------CTGCAAGCC 403
|.|.||.||||| |||.| .|||| ||||
BPUM_1290___k 374 TTCAAACAACATCAGAAGTGTCAGAACAGTCGTTAGGCAGTCTGC----- 418
BSNT_02342___ 404 CGGAATCGACT-----ACATATATAACGGATGATTATGAACGGTTGGTTG 448
||.|| ||||.| |.| |||...|||||..|||.|||
BPUM_1290___k 419 ------CGGCTTTCCAACATGT----CAG-TGAAGCTGAACAATTGATTG 457
BSNT_02342___ 449 AAAATCTCCCGAGTCCGCTATGCATCAGTGTCAA----AGGCAAGATCGT 494
..||.||.||.|.||||.||||.||.| |.| |||..|.||.||
BPUM_1290___k 458 CCAAACTGCCAAATCCGTTATGTATTA----CGATTTTAGGGGAAATTGT 503
BSNT_02342___ 495 CTATGTAAACAGCGCGATGCTCTCAA-TGCTGGGAG-CAAAAAGCAAG-G 541
.||||.|||....|||||||| |||| |..||||.| ||..| |||| |
BPUM_1290___k 504 TTATGCAAATGATGCGATGCT-TCAATTAATGGGGGTCAGTA--CAAGAG 550
BSNT_02342___ 542 ATGCTATTATTGG--AAAATGGTCCTATGAATTTATTGAAGAAGAATATC 589
|||..||.||.|| |||.|| |.|.|||.|||||||..||.||.||.|
BPUM_1290___k 551 ATGACATGATCGGCAAAACTG--CATTTGACTTTATTGCTGAGGAGTACC 598
BSNT_02342___ 590 ATGATATCGTGAAAAACAGGATTATACGA--ATGCAAAAAGGAATGGAAG 637
||||.||.||||.||.|.|.|| ||||| .|||||.||||..|...||
BPUM_1290___k 599 ATGACATTGTGAGAAGCCGAAT--TACGAGGCTGCAAGAAGGTCTTCCAG 646
BSNT_02342___ 638 TCGGAATGATTGAACAGACGTGGAAAAGGCTTGATGGCA----CACCTGT 683
||||||||||||||||||..|||||..||...|||||.| || |
BPUM_1290___k 647 TCGGAATGATTGAACAGATATGGAAGCGGAAAGATGGGAGTAGCA----T 692
BSNT_02342___ 684 TCATTTAGAAGTGAAAGCATCCCCGACCGTCTACAAAAACCAGCAGGCTG 733
||||.|.||||||||..||||.||.||..||||..||||.||||.|||.|
BPUM_1290___k 693 TCATATTGAAGTGAAGTCATCACCAACGATCTATCAAAATCAGCGGGCAG 742
BSNT_02342___ 734 AGC---TGCTGCTGATCGATATCTCTTCAAGGAAAAAATTCCAAACCATC 780
||| |||||.|..|.||.||.||.||..|.||.||||||||||||.|.
BPUM_1290___k 743 AGCTTTTGCTGTTAGTAGACATTTCATCCCGTAAGAAATTCCAAACCGTT 792
BSNT_02342___ 781 CTGCAAAAAAGCCGTGAACGATATCAGCTGCTGATTCAAAATTCCATTGA 830
||||||||||||||.||.||.|||||||||||.||.|||||.||||||||
BPUM_1290___k 793 CTGCAAAAAAGCCGGGAGCGGTATCAGCTGCTCATCCAAAACTCCATTGA 842
BSNT_02342___ 831 TACCATTGCGGTGATTCACAATGGAAAATGGGTGTTTATGAATGAATCGG 880
|||.||||||||.|||||..||...|||||||||||||||||||||||.|
BPUM_1290___k 843 TACGATTGCGGTCATTCATGATCACAAATGGGTGTTTATGAATGAATCAG 892
BSNT_02342___ 881 GAATTTCCCTGTTTGAAGCGGCTACATATGAGGAT---------TTAATT 921
|.|||...||.|||||||| ||||.|| |||||.
BPUM_1290___k 893 GCATTAAACTATTTGAAGC---------TGAGCATTACGATAAATTAATA 933
BSNT_02342___ 922 GGCAAAAACATATACGATCAGCTGCATCCTTGCGATCACGAGGATGTAAA 971
||.|||.|.||.|.|.||||..|.|||.|.||.||.||..|..|.||.||
BPUM_1290___k 934 GGAAAAGATATTTTCCATCAAATCCATTCATGTGACCAGCAAAAAGTGAA 983
BSNT_02342___ 972 AGAGAGAATCCAAAACATCGCCGAGCA---AAAAA----CAGAATCTGAA 1014
|.||||.|| |||.|..|..| |||.| ||||.|||||.
BPUM_1290___k 984 AAAGAGCAT-------ATCACGTATTATTGAAAGAGCTTCAGATTCTGAG 1026
BSNT_02342___ 1015 ATTGTCA-----AGCAATCCTGGTTCACCTTTCAGAACAGGGTCATCTAT 1059
||||||| |||..||.| ||.|||.|..|||.|.|.||.|||
BPUM_1290___k 1027 ATTGTCACGATGAGCTGTCAT-----ACGTTTAAACACAAGCTGATTTAT 1071
BSNT_02342___ 1060 ACGGAGATGGTCTGCATTCCGACGACCTTTTTTGGTGAAGCGGCCGTCCA 1109
||.||.|||||.||.||.||.||.||.||||||||.|||.|.|||||.||
BPUM_1290___k 1072 ACAGAAATGGTGTGTATCCCAACTACATTTTTTGGGGAAACAGCCGTTCA 1121
BSNT_02342___ 1110 GGTCATTCTTCGGGATATCTCAGAGAGAAAACAAACAGAAGAATTGATGC 1159
..|.|||.|..|.|||||.||.||..|.||.||.||||||||..|.||||
BPUM_1290___k 1122 AATTATTTTAAGAGATATATCCGAACGCAAGCAGACAGAAGAGCTCATGC 1171
BSNT_02342___ 1160 TGAAATCGGAAAAATTATCAATCGCAGGGCAGCTCGCGGCGGGAATCGCC 1209
|...|||.|||||||||||.||||||||.||..|.||.||.||.||.||.
BPUM_1290___k 1172 TTCGATCTGAAAAATTATCGATCGCAGGTCAATTGGCTGCAGGCATTGCA 1221
BSNT_02342___ 1210 CATGAGATCCGCAACCCTCTTACAGCGATCAAAGGATTTTTACAGCTGAT 1259
||||||||..|.|||||..|.||.||.||||||||.|||||.|||||.||
BPUM_1290___k 1222 CATGAGATTAGGAACCCATTGACTGCCATCAAAGGCTTTTTGCAGCTCAT 1271
BSNT_02342___ 1260 GAAACCGACAATGGAAGGCAAC--GAACATTACTTTGATATTGTGTTTTC 1307
.|||||||.||.|.||| |.| ||.||.||.||.||.|||||.||.||
BPUM_1290___k 1272 TAAACCGAAAACGAAAG--ATCGAGATCAATATTTCGAGATTGTTTTCTC 1319
BSNT_02342___ 1308 TGAACTCAGCCGTATCGAATTAATACTCAGTGAATTGCTCATGCTGGCGA 1357
|||.||.|||||.||.|||.|.||..|.||.||..|||||||||||||.|
BPUM_1290___k 1320 TGAGCTGAGCCGGATAGAAATTATTTTAAGCGAGCTGCTCATGCTGGCAA 1369
BSNT_02342___ 1358 AACCTCAGCAAAATGC-----TGTCAAAGAATATTTGAACTTGAAAAAAT 1402
||||.|||||||..|| || ||||.|.|| .|.|||||||||.
BPUM_1290___k 1370 AACCGCAGCAAACGGCATCCATG-CAAACACTA----GATTTGAAAAAAA 1414
BSNT_02342___ 1403 TAATTGGTGAGGTTTCAGCCCTGTTAGAAACGCAGGCGAATTTAAATGGC 1452
|.||..|.||.||..|.||..|.||||||||.||.|||||||||||||||
BPUM_1290___k 1415 TCATCAGCGAAGTCACGGCTTTATTAGAAACACAAGCGAATTTAAATGGC 1464
BSNT_02342___ 1453 ATTTTTATCAGAACA--AGTTATGA-AAAAGACAGCATTTAT----ATAA 1495
|||||.|| ||||| |||.| || |.||||..| |.| ||.|
BPUM_1290___k 1465 ATTTTAAT--GAACACGAGTGA-GATAGAAGAGGG----TCTCCTGATGA 1507
BSNT_02342___ 1496 ACGGGGATCAAAACCAATTAAAGCAGGTATTCATTAATTTAATCAAAAAT 1545
|.|||||.|||||.||..|.||.|||||.||.||.|||||||||||||||
BPUM_1290___k 1508 ATGGGGACCAAAATCAGCTCAAACAGGTGTTTATCAATTTAATCAAAAAT 1557
BSNT_02342___ 1546 GCAGTTGAATCAATGCCTGATGG-GGGAACAGTAGACATTA---TCATAA 1591
||.||.|||||.|||||.||.|| ||||| .||.||.|||| .||.|.
BPUM_1290___k 1558 GCCGTAGAATCCATGCCGGACGGAGGGAA-GGTTGATATTACGGCCAAAG 1606
BSNT_02342___ 1592 CCGA---AGATGAGCATTCTGTTCATGTTAC----TGTCAAAGACGAAGG 1634
|.|| ||||| |.| ||||.||.|| .|| ||.|||||
BPUM_1290___k 1607 CAGAAAGAGATG-GAA-----TTCACGTCACCATTCGT----GATGAAGG 1646
BSNT_02342___ 1635 GGAAGGTATACCTGAAAAGGTACTAAACCGGATTGGAGAGCCATTTTTAA 1684
|...||.||.||||||..|||..|.||.||.||.||||||||.|||||||
BPUM_1290___k 1647 GATCGGCATTCCTGAAGCGGTTATGAAGCGAATAGGAGAGCCCTTTTTAA 1696
BSNT_02342___ 1685 CAACAAAAGAAAAAGGTACGGGGCTTGGATTAATGGTGACATTTAATATC 1734
|.|||||.||||||||.||.|||||.||..|.|||||||||||||||||.
BPUM_1290___k 1697 CGACAAAGGAAAAAGGGACTGGGCTAGGGCTTATGGTGACATTTAATATT 1746
BSNT_02342___ 1735 ATTGAAAACCATCA--GGGA-GTTATACATGTGGACAGCCATCCTGAAAA 1781
.|.|||||.|| || |||| | ||.|.||||||.||.|||||.|||||
BPUM_1290___k 1747 TTAGAAAATCA-CAACGGGACG--ATCCGTGTGGATAGTCATCCAGAAAA 1793
BSNT_02342___ 1782 AGGCACAGCGTTTAAAATTTCA--TTTCC-AAAAAATAAAACAACGGCTT 1828
.|||||.||.|||.|.| ||| ||||| ..|||||||
BPUM_1290___k 1794 GGGCACCGCATTTCACA--TCATGTTTCCTGCAAAATAA----------- 1830
BSNT_02342___ 1829 AA 1830
BPUM_1290___k 1830 -- 1830
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