Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00481 and BPUM_1294
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:18
# Commandline: needle
# -asequence dna-align/BSNT_00481___yczC.1.24716.seq
# -bsequence dna-align/BPUM_1294.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00481___yczC-BPUM_1294.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00481___yczC-BPUM_1294.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00481___yczC
# 2: BPUM_1294
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 587
# Identity: 246/587 (41.9%)
# Similarity: 246/587 (41.9%)
# Gaps: 250/587 (42.6%)
# Score: 446.5
#
#
#=======================================
BSNT_00481___ 0 -------------------------------------------------- 0
BPUM_1294 1 ATGGAAACAAACATAACAGAACCACACATTCAAGAAAAGAAGCATCCTGA 50
BSNT_00481___ 1 --------------------------TTGGA-AC----TAGCTGGTTTCA 19
|||.| || |||.||||.|||
BPUM_1294 51 ACTAGCAGGCGTAGGCTATCGTTTTCTTGCACACCTTTTAGATGGTATCA 100
BSNT_00481___ 20 T--GCTGCGCGCC---TGCGCTCTTTTACTTGATGTAATCATTGCCGCAG 64
| .|.|||..|| | ||||||| |.|||| |.|||...|||.
BPUM_1294 101 TCATCGGCGTACCATAT----TCTTTTA--TCATGT--TTATTTTGGCAA 142
BSNT_00481___ 65 CAGTGATTTT---------------GGCAGC--------CGGAT------ 85
||.|..|||| |||||| .||||
BPUM_1294 143 CACTCTTTTTTGTCTCAAGTCCTGAGGCAGCAATGATGATGGATGACGAC 192
BSNT_00481___ 86 -----TTAC------------GTT-TGGC-GATG-GGTCCGCCGG-TGTC 114
|||| ||| ||.| |||| ||.|.| || .|||
BPUM_1294 193 AGCTATTACTATTCAACAACTGTTATGACAGATGAGGACTG--GGCAGTC 240
BSNT_00481___ 115 ATTA------------TTGTCGCCAT---ATTGATGCTGATTGTGTACC- 148
|||| ||.||..||| |..|||..||.|.| |||.|
BPUM_1294 241 ATTATGGGACTTATCTTTTTCTACATAGGAGCGATCTTGGTCG-GTATCG 289
BSNT_00481___ 149 -----------CTTTGCTGATGCCGC-------------TGACAAATTGG 174
|||| ||..||| |.| |||.||.
BPUM_1294 290 TGGTGACATGGCTTT----ATTACGCCATCATGGAATCATCA-AAACTGC 334
BSNT_00481___ 175 AAGGGCACACTGGGCAAAA---------AAATCATCGGGCTGCAAATCGT 215
|| ||.||.||.||.||.| .|||.|..| ||..||..||
BPUM_1294 335 AA-GGAACGCTCGGTAAGATGGCTCTTGGAATTAAAG---TGACAAGAGT 380
BSNT_00481___ 216 GAGGGACGAAACATATAAAAAAATATCCTTCCCGCAAGCCA-TTGTCCGT 264
.|.||.|| |||||.| |.|| |||.||||
BPUM_1294 381 AACGGGCG---------AAAAAGT-------------GACATTTGGCCGT 408
BSNT_00481___ 265 -TACCTGATAGCGTGGGTGCA--------TGTGTTCTCCCGCCTGATCTA 305
.|.|.|.|.||.|...|||| |.|| |||||...||.||.||
BPUM_1294 409 GCAACAGGTCGCTTTTTTGCAAAAGGCTTTTTG-TCTCCAATCTTATATA 457
BSNT_00481___ 306 TT-------TGACTGCCGCATTTACGAAGAAAAAACAAACCGTTCATGAT 348
|| |.|.||||...||.||..|||||||||||.|..||||.|||
BPUM_1294 458 TTGGCTACATCATTGCCTTTTTCACAGAGAAAAAACAAGCACTTCACGAT 507
BSNT_00481___ 349 ATGGCTGCGAAAACCATTGTGCTGAAAGCAG-AATAA 384
.|...|||.|..||||||||..||| || |||||
BPUM_1294 508 TTAATTGCAAGTACCATTGTTGTGA----AGAAATAA 540
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