Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02347 and BPUM_1296

See Amino acid alignment / Visit BSNT_02347 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:49
# Commandline: needle
#    -asequence dna-align/BSNT_02347___cheV.1.24716.seq
#    -bsequence dna-align/BPUM_1296___cheV.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02347___cheV-BPUM_1296___cheV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02347___cheV-BPUM_1296___cheV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02347___cheV
# 2: BPUM_1296___cheV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 931
# Identity:     650/931 (69.8%)
# Similarity:   650/931 (69.8%)
# Gaps:          68/931 ( 7.3%)
# Score: 2189.5
# 
#
#=======================================

BSNT_02347___      1 ----------------------------TTGGATTCTGGTACAAATGAAT     22
                                                 || ||.||||||||.|||||||
BPUM_1296___c      1 GTGGCTTTAAACAAACAAGAAATTTTACTT-GACTCTGGTACCAATGAAT     49

BSNT_02347___     23 TAGAAATTGTGAAGTTTGGCGTGGGTGAAAATGCTTTCGGAATTAACGTC     72
                     |.||||||||||||||||...|.|||..||||...|||||.|||||||||
BPUM_1296___c     50 TGGAAATTGTGAAGTTTGAAATTGGTTCAAATCAATTCGGCATTAACGTC     99

BSNT_02347___     73 ATGAAGGTAAGAGAAATTATTCAGCCTGTCGAGGTGACATCAGTGCCTCA    122
                     |||||.|||||||||||.||||||||.||.||||||||...|||.||.||
BPUM_1296___c    100 ATGAAAGTAAGAGAAATCATTCAGCCGGTTGAGGTGACGGTAGTACCGCA    149

BSNT_02347___    123 CTCCCATCAGCATGTAGAAGGAATGATTAAACTCAGAGGAGAAATCCTCC    172
                     |||.|||||..||||||||||.|||||||...|..||||.||.||..|.|
BPUM_1296___c    150 CTCTCATCAAGATGTAGAAGGGATGATTAGTTTACGAGGCGAGATTTTAC    199

BSNT_02347___    173 CTGTGATCAGTCTCTTCTCATTTTTTGGAGTAGAGCCTGA--AGGATCAA    220
                     |.||.||||.|||.||.||.||||||...||.|||.|.||  ||  |||.
BPUM_1296___c    200 CAGTCATCAATCTATTTTCCTTTTTTAATGTCGAGTCAGATCAG--TCAG    247

BSNT_02347___    221 AAGATGAGAAATATATCGTGACTGAATTTAATAAACGGAAAATTGTTTTT    270
                     ||.|.|||||||||||.|||||||||||.||..||||||||.||||.||.
BPUM_1296___c    248 AACAAGAGAAATATATTGTGACTGAATTCAACCAACGGAAATTTGTGTTC    297

BSNT_02347___    271 CATGTCGGCTCTGTTTCTCAAATTCACAGAGTATCCTGGGAAGCGATTGA    320
                     |||...||..|.||.||.|||||||||.|.||...||||||||.||||||
BPUM_1296___c    298 CATACAGGAACGGTATCACAAATTCACCGCGTCAGCTGGGAAGAGATTGA    347

BSNT_02347___    321 AAAGCCGACATCGTTAAATCAAGGAATGGAGCGGCACCTTACCGGGATTA    370
                     ||||||.||..|..|.||||||||.|||||.||.||..|.|||||.||.|
BPUM_1296___c    348 AAAGCCAACTGCACTCAATCAAGGGATGGATCGTCATTTAACCGGTATCA    397

BSNT_02347___    371 TTAAGCTCGAAGACCTGATGATCTTTTTGCCTGACTATGAAAAAATTATT    420
                     |||||||.||.||....|||||.||..|.||.||.|||||.|||||.|||
BPUM_1296___c    398 TTAAGCTTGATGAAAAAATGATTTTCCTTCCAGATTATGAGAAAATCATT    447

BSNT_02347___    421 TATGACATTGAATCAGATTCAGGTGTTGACACGTATAATATGCATACCGA    470
                     |||||.||||||||.|.|||.||.||.||.||||||.|||||..|   ||
BPUM_1296___c    448 TATGATATTGAATCCGCTTCTGGAGTAGAAACGTATCATATGTTT---GA    494

BSNT_02347___    471 GGGCTT-----CGATGAAAGAAGAACTGATAAAAAGC-TTATCATTGTAG    514
                     .||  |     .||.||.||||||||.|..||.|||| |||| .|.||.|
BPUM_1296___c    495 CGG--TGAGAAAGACGAGAGAAGAACAGGGAAGAAGCTTTAT-GTCGTTG    541

BSNT_02347___    515 AGGACTCACCGCTTTTGATGCGCCTCTT-GCAGGATGAATTAAAAGAAGC    563
                     |.|||||.|||||..|.|||||..|.|| .|| .|||||||||..|||||
BPUM_1296___c    542 AAGACTCTCCGCTGCTCATGCGTTTATTAACA-AATGAATTAACCGAAGC    590

BSNT_02347___    564 AGGGTACAACAACATCGCTTCGTTTGAAAATGGAAAAGAGGCATATGAAT    613
                     |||.||.||.|||||.|...|.||||||.|.||.|||.||||||||||..
BPUM_1296___c    591 AGGCTATAAAAACATTGTGACCTTTGAAGACGGGAAACAGGCATATGACC    640

BSNT_02347___    614 ACATTATGAACCTTG-CTGAAAACGAA--ACTGATTTATCAGAACAGATT    660
                     ||.|.|||.|||||| |.|.|||.|||  ||||   |..|||||.|.|||
BPUM_1296___c    641 ACGTGATGGACCTTGTCAGCAAAGGAATTACTG---TGACAGAAGAAATT    687

BSNT_02347___    661 GATATGATCATCACTGATATTGAAATGCCAAAAATGGACGGACACAGGCT    710
                     ||||||||.||.||.||||||||||||||.||||||||.||.|||.|..|
BPUM_1296___c    688 GATATGATTATTACAGATATTGAAATGCCTAAAATGGATGGTCACCGCTT    737

BSNT_02347___    711 CACAAAGCTGCTGAAGGAAAATCC---GAAAAGCT-CAGATGTGCCGGTT    756
                     .||.||..||.|||||||||||||   .|.|||.| ||    |.||..||
BPUM_1296___c    738 AACGAAATTGTTGAAGGAAAATCCTTTAACAAGTTCCA----TACCAATT    783

BSNT_02347___    757 ATGATTTTCTCATCGTTAATTACGGATGATCTGCGTCACCGCGGCGAAGT    806
                     .|.||.|||||.|||.|.||.|||||.|||.|.||.||....||.|||..
BPUM_1296___c    784 CTCATCTTCTCTTCGCTCATCACGGAAGATTTACGCCATAAAGGGGAAAC    833

BSNT_02347___    807 TGTAGGCGCAGATGAGCAAATCAGCAAGCCTGAGA-TCAGTGATTTGATT    855
                     ..|.||.||||||||.|||||.||||||||.||.| ||| |.|..|.|||
BPUM_1296___c    834 AATCGGTGCAGATGATCAAATTAGCAAGCCAGAAATTCA-TCAACTAATT    882

BSNT_02347___    856 AAAAAAGTGGAT-ACGTATGTTATTGAATAA    885
                     .|||||||.||| || |.|.||||..||   
BPUM_1296___c    883 GAAAAAGTCGATCAC-TTTATTATCTAA---    909


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