Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02350 and BPUM_1300

See Amino acid alignment / Visit BSNT_02350 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:49
# Commandline: needle
#    -asequence dna-align/BSNT_02350___ykuC.1.24716.seq
#    -bsequence dna-align/BPUM_1300___ykuC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02350___ykuC-BPUM_1300___ykuC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02350___ykuC-BPUM_1300___ykuC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02350___ykuC
# 2: BPUM_1300___ykuC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1349
# Identity:     843/1349 (62.5%)
# Similarity:   843/1349 (62.5%)
# Gaps:         208/1349 (15.4%)
# Score: 2670.5
# 
#
#=======================================

BSNT_02350___      1 ATGGATATATTTAAAAATCGTAATTTTGTTCGTCTATTTTTCGCAGCACT     50
                                                                       
BPUM_1300___y      0 --------------------------------------------------      0

BSNT_02350___     51 CGCTTCTCAAATGGGCACGACAGTAGGCAACATGGCCTTTGCTTTTTTTT    100
                                                    |||||.||.||.||||.||
BPUM_1300___y      1 -------------------------------ATGGCGTTCGCCTTTTATT     19

BSNT_02350___    101 TGCTGGACCGAT-----TCAGCAGCCAGCCTTCATATACGACCTTGGCGG    145
                     ||||.||.| ||     |||.|||||.|||    |||.|.||.||.||.|
BPUM_1300___y     20 TGCTCGATC-ATTTTAGTCATCAGCCCGCC----TATGCCACATTAGCAG     64

BSNT_02350___    146 AGCTGATGTATTCTCTTCCGACCATATTTGTATTTCTGATCGTGGGAGTC    195
                     ||||.||||||||.|||||.||.||.|||||.|||.|.||.||.||.|||
BPUM_1300___y     65 AGCTCATGTATTCACTTCCAACGATCTTTGTCTTTTTTATGGTCGGTGTC    114

BSNT_02350___    196 GTCGCGGACCGGTTTGACAGAAAAAAGGTGGCAGAAAATTGTGATTGGAT    245
                     ||.||.||.||.|||||..|.|||||.||.|||||.|||||.||||||||
BPUM_1300___y    115 GTAGCAGATCGTTTTGATCGTAAAAAAGTCGCAGAGAATTGCGATTGGAT    164

BSNT_02350___    246 CAGAGCAGGCCTGAC---TGTCGTGCTTTTTTTCACTTTATTTACCGGCA    292
                     ..||||.||.|||||   |||..|..||.||.|.| |||||||     .|
BPUM_1300___y    165 ACGAGCTGGGCTGACGATTGTTTTATTTATTGTTA-TTTATTT-----TA    208

BSNT_02350___    293 AT---ATTCCTCTTGTTTT-TTGTATCTTATTTATCAGAAGCGCTGTAAC    338
                     ||   .||||.|||.|||| ||| |||||.|||||..||||.||..|.||
BPUM_1300___y    209 ATTCACTTCCACTTATTTTCTTG-ATCTTGTTTATTCGAAGTGCCATTAC    257

BSNT_02350___    339 AAAGTTTTTCTTTCCGGCAGAAAACAGTTTGGTACAAGCCATTCTGCCGA    388
                     .|||||.||||.|||.||.|||..|..|.|.||.||.||.|||.|....|
BPUM_1300___y    258 GAAGTTCTTCTATCCAGCTGAAGCCTCTCTCGTTCAGGCGATTTTAAATA    307

BSNT_02350___    389 AGGAGCATTATGCGAAAGCGGCAGGGCTT-AATCAGATGCTTTTTAGCAT    437
                     |.||.||.|||||.|||||.|| .||||| |||||.|||||.|||||..|
BPUM_1300___y    308 AAGATCAATATGCAAAAGCCGC-TGGCTTAAATCAAATGCTATTTAGTTT    356

BSNT_02350___    438 TTTTATGGTGTTTGGAGTCGGTATAGGCGCATTTATGTACAACACCATCG    487
                     .||.|||||.|||||.||.||.||.||.||..|||||||.||.||.||.|
BPUM_1300___y    357 ATTCATGGTATTTGGCGTTGGAATCGGTGCGATTATGTATAAGACGATTG    406

BSNT_02350___    488 GTATTGAAGGCGCCATTATTCTTGATTTTGTCAGCTTTATCATTTCCGGG    537
                     |..|..|.||.|||||||...|||||||..||||.|||||..|.||.||.
BPUM_1300___y    407 GACTCCACGGTGCCATTACGATTGATTTGATCAGTTTTATTGTGTCAGGC    456

BSNT_02350___    538 CTGCTCATCCG--CAGCTGCCGGATTCCAAAAGAAGCCCGACAGCCAAAC    585
                     .|.||.||.||  ||  ||....|||||||..|||||.||.||||||||.
BPUM_1300___y    457 ATCCTGATTCGTTCA--TGTAACATTCCAATTGAAGCACGTCAGCCAAAT    504

BSNT_02350___    586 GGTGCATTCA-GCTGGAGA---AAGACTTCTGTTAAGGATTCAA------    625
                     || .||..|| ||||||||   |.|||          .|||.||      
BPUM_1300___y    505 GG-ACAAGCAGGCTGGAGAGGCATGAC----------CATTAAAACGTCT    543

BSNT_02350___    626 -TAAATGACTTTAGAGAAGGCATCCTCTATATTTTAAAAAACAAATTGCT    674
                      ||||.||.||||.|||||||||.||.||.|||.|||||||.||||||.|
BPUM_1300___y    544 CTAAAAGATTTTAAAGAAGGCATACTTTACATTATAAAAAATAAATTGTT    593

BSNT_02350___    675 GGCATCTCTTATTTTTGGCTTCTTTATTTTTGGATTTGTCAATGGAGGAT    724
                     |||.|||.|.|||||||||||.|||.|||||||..|.||||||||.|.||
BPUM_1300___y    594 GGCTTCTTTAATTTTTGGCTTTTTTGTTTTTGGTCTAGTCAATGGCGCAT    643

BSNT_02350___    725 TCGCCGTATTGCCGATGTTTACAATGAAATATGGATTGGCGCCTGACCGT    774
                     |.||.|||.|.|||||||||||||||||||||||..|..|.||.||||.|
BPUM_1300___y    644 TTGCTGTACTTCCGATGTTTACAATGAAATATGGCCTTTCACCGGACCAT    693

BSNT_02350___    775 TATGAGTGGCATACGTCTGTATTTACGATCGCACTCGGGTTTGGGCTGCT    824
                     |.|||...||||||.||..|.|||||.||.|||.|.||....||.||.||
BPUM_1300___y    694 TTTGAACTGCATACATCGTTCTTTACAATTGCAATTGGTGCCGGTCTACT    743

BSNT_02350___    825 GGCAGGCAGCGTAATCGGCACGATCATCT--CTAAAAAAGTGAAGCCGCA    872
                     .|..||||||.||||.|||.|.||  |||  ||||||||||.|||..|||
BPUM_1300___y    744 TGTTGGCAGCTTAATGGGCTCTAT--TCTTGCTAAAAAAGTAAAGATGCA    791

BSNT_02350___    873 CTTTTTAATGTCGATACCGATTTTCATTGCAGGTTTGCTGATCTTCGTCC    922
                     .|.|.|.||||||.|.||.|||||..|||||||..|.|||||.||.||.|
BPUM_1300___y    792 ATATCTCATGTCGCTTCCAATTTTGGTTGCAGGCATTCTGATTTTTGTAC    841

BSNT_02350___    923 TCGGCTACACCAATATTTTATGGGTGTATTACGCGGCAGCTTTTG-CACT    971
                     |.||.|.||||.|.|...|||||.|||.|||.|...||.|.|||| ||.|
BPUM_1300___y    842 TTGGTTCCACCCACACACTATGGTTGTTTTATGTCACATCATTTGTCATT    891

BSNT_02350___    972 GGGA-ATGTGCATCGGACCGATCAACATTGCAATCGGAGGCTGGATGCCC   1020
                     ||.| |  |||||.||.||..|||||||||..||.||.||||||.||||.
BPUM_1300___y    892 GGTACA--TGCATTGGCCCAGTCAACATTGTCATTGGCGGCTGGCTGCCA    939

BSNT_02350___   1021 AAAATTGTTCATCCAAAACTGATGGGACGTGTAAG-CGGCATGCAG---G   1066
                     |.|||.||.||.||.....|||||||||||||  | |||..||  |   |
BPUM_1300___y    940 AGAATCGTCCACCCTCGTTTGATGGGACGTGT--GTCGGGTTG--GGTTG    985

BSNT_02350___   1067 ACCCTTTTATGATGTTTGCACAGTCTTTGACACTTGGCTTAGTCGCGCTG   1116
                     |.||..|||..||||||||.||.||..|||||.|.||.||..|.|||.|.
BPUM_1300___y    986 ATCCACTTACCATGTTTGCTCAATCCATGACATTAGGTTTGATTGCGGTA   1035

BSNT_02350___   1117 TTATTCCCTAAGTTTGTTTCAAACATTGATTATCTTTATTACGGCATGGG   1166
                     .|.||.||.||..|..||.|||||.||..||||.||||||||||.|||||
BPUM_1300___y   1036 CTTTTTCCAAAACTCATTACAAACGTTTCTTATATTTATTACGGAATGGG   1085

BSNT_02350___   1167 TGTTATTATCCTGCTCGTTTTTATTTTTTATTTTATTGCACTGCCAAAAT   1216
                     .||||||||..|.||||||||..|||||||.||..||.||||||||||.|
BPUM_1300___y   1086 CGTTATTATTTTACTCGTTTTCCTTTTTTACTTCTTTACACTGCCAAAGT   1135

BSNT_02350___   1217 ACAGTGCTCAG----GCT------------GTG------GAAGTGAATGT   1244
                     .|||    |||    |||            |||      |||.|.||.|.
BPUM_1300___y   1136 TCAG----CAGAGAAGCTGATGACTTAGACGTGCAGCGTGAACTTAAAGG   1181

BSNT_02350___   1245 TCAGGAAGCATTTCAAGAACAGCCGAAAAAGAAGGCAAGATCTGTATAA   1293
                     |||||.|||   .|||.||                              
BPUM_1300___y   1182 TCAGGGAGC---GCAATAA------------------------------   1197


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