Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02352 and BPUM_1301

See Amino acid alignment / Visit BSNT_02352 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:49
# Commandline: needle
#    -asequence dna-align/BSNT_02352___ykuD.1.24716.seq
#    -bsequence dna-align/BPUM_1301___ykuD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02352___ykuD-BPUM_1301___ykuD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02352___ykuD-BPUM_1301___ykuD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02352___ykuD
# 2: BPUM_1301___ykuD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 559
# Identity:     345/559 (61.7%)
# Similarity:   345/559 (61.7%)
# Gaps:         116/559 (20.8%)
# Score: 956.5
# 
#
#=======================================

BSNT_02352___      1 ATGAGGAAACTGCT----TACGTACCAGGTGAAGCAAGGTGATACACTGA     46
                              .||||    ||  |||  |||.||.|..||.||.||.||  
BPUM_1301___y      1 ---------GTGCTGCGATA--TAC--GGTAAAACGCGGAGAAACGCT--     35

BSNT_02352___     47 ACAGC----ATCGCGGCTGATTTCAGAATCAGC-ACGGCTGCATTACTCC     91
                       .||    ||.|||..||||||..||| ||.| ||.|.|||.|||   .
BPUM_1301___y     36 --TGCTTCTATAGCGCTTGATTTTCGAA-CAACAACAGATGCTTTA---A     79

BSNT_02352___     92 AGGCT---AATCCGTCACTGC-AGGC--AGGGCTCACCGCAGGACA----    131
                     |||||   ||.||.||||||| ||||  ||.||      |.|.|||    
BPUM_1301___y     80 AGGCTGCAAACCCTTCACTGCAAGGCCAAGAGC------CGGTACAAAAT    123

BSNT_02352___    132 ---GTCCATAGTCATCCCCGGACTGCCGGACCCTTATACAATTCCGTATC    178
                        || |||..||||.||.||.|||||.||.||..||||.||.||.||.|
BPUM_1301___y    124 GAGGT-CATCATCATTCCTGGTCTGCCCGATCCAAATACGATCCCTTACC    172

BSNT_02352___    179 ATATCGCAGTCTCAA--TCGGAGCGAA-GACCC-------TTAC------    212
                     ..|||.|.||.||||  || .|||.|| |.|.|       ||.|      
BPUM_1301___y    173 GCATCTCTGTTTCAATTTC-AAGCAAACGTCTCGTCTTGTTTTCTGGATC    221

BSNT_02352___    213 ---GCTG-TTCCTAAATAATCGGGTAATGAAAACCTATCCCATCGCCGTT    258
                        |||| |||           |||        |.|||||.||.||....
BPUM_1301___y    222 AGAGCTGATTC-----------GGT--------CGTATCCGATTGCAACA    252

BSNT_02352___    259 GGTAAAATACTAACGCAA----ACGCCTACTGGCGAGTT----TTACATT    300
                     ||.|.|||..||    ||    ||.||.||.|    |||    |||.|||
BPUM_1301___y    253 GGAAGAATTTTA----AATATGACACCGACAG----GTTCTTATTATATT    294

BSNT_02352___    301 ATTAACCGCCAGCGCAATCCC-GGCGGCCCATTTGGCGCTTATTGGCTGA    349
                     .|.|||.|.|||| |||.||| ||.||.||.||||||||.||||||||||
BPUM_1301___y    295 GTGAACAGACAGC-CAAACCCAGGAGGTCCCTTTGGCGCCTATTGGCTGA    343

BSNT_02352___    350 GCCTTTCAAAGCAG--CACTACGGAATACATGGGACGAATAATCCCG-CT    396
                     ||||.||.||  ||  ||.|||||.||.||.||.|||||||| |||| ||
BPUM_1301___y    344 GCCTCTCGAA--AGTTCATTACGGCATTCACGGTACGAATAA-CCCGTCT    390

BSNT_02352___    397 TCGATTGGTAAGGCTGTTTCTAAAGGCTGCATTCGCATGCATAA-CAAAG    445
                     ||.||||||||.|||||.||||.|||.||||||||.|||.|||| ||.| 
BPUM_1301___y    391 TCAATTGGTAAAGCTGTGTCTAGAGGATGCATTCGTATGTATAATCAGA-    439

BSNT_02352___    446 ACGTGATCGAACTTGCTTCAATTGTGCCAAACGGAACAAGAGTCACGATT    495
                     |.||.|||||||||||||||||.||.|||||.||||||...||.||.|||
BPUM_1301___y    440 ATGTCATCGAACTTGCTTCAATCGTTCCAAATGGAACACCTGTGACCATT    489

BSNT_02352___    496 AACCGGTAA    504
                     |.||.||||
BPUM_1301___y    490 AGCCAGTAA    498


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