Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02354 and BPUM_1303

See Amino acid alignment / Visit BSNT_02354 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:50
# Commandline: needle
#    -asequence dna-align/BSNT_02354___ykuF.1.24716.seq
#    -bsequence dna-align/BPUM_1303___ykuF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02354___ykuF-BPUM_1303___ykuF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02354___ykuF-BPUM_1303___ykuF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02354___ykuF
# 2: BPUM_1303___ykuF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 820
# Identity:     539/820 (65.7%)
# Similarity:   539/820 (65.7%)
# Gaps:         110/820 (13.4%)
# Score: 1642.5
# 
#
#=======================================

BSNT_02354___      1 ATG--GAAAAAAAGGCGGTAATTATTACCGGCGGGTCAAGCGGCATGGGA     48
                     |||  ||||.|||  |.||.|||.|.||.||.||.||||||||.|||||.
BPUM_1303___y      1 ATGACGAAACAAA--CAGTGATTGTCACAGGGGGATCAAGCGGAATGGGG     48

BSNT_02354___     49 AAAGCGATGGCAAAAAAACAGGCTG---AATT---------AGGGTGGCA     86
                     ||.|||||            |||||   |.||         |||.|||.|
BPUM_1303___y     49 AAGGCGAT------------GGCTGTCCATTTGGCACACGAAGGCTGGAA     86

BSNT_02354___     87 CGTTATGGTGACAGGGAGGAACCATGAGGCACTTGAGGAAAC------AA    130
                     .||..||.|.||| |||.||||           .||.|||||      ||
BPUM_1303___y     87 TGTCGTGATTACA-GGAAGAAC-----------AGAAGAAACGTTAGAAA    124

BSNT_02354___    131 A------AAAAGAAATTCAGAC--CTTTGAGGGACAGGTCGCTTGTTTTC    172
                     |      |||.|||| |||.||  ..|.|.||..| |.||||||..||.|
BPUM_1303___y    125 AGGTAGCAAATGAAA-TCAAACAAAATGGCGGCTC-GATCGCTTACTTCC    172

BSNT_02354___    173 AAATGGATGTCCGTTCC------GATTCCGCCGCT--TCAGACATGATTA    214
                     ||||||||||.||...|      |||      |||  ||  |.|||.|.|
BPUM_1303___y    173 AAATGGATGTGCGAAACCCAGAGGAT------GCTGATC--AAATGGTCA    214

BSNT_02354___    215 AAGAAGCGGTAAAAGCCTTTGGCCGGCTTGACGCGCTGATTAACAACGCG    264
                     ||...||.|||.|..|.|||||.....|.|||||.|||||||||||.||.
BPUM_1303___y    215 AATTTGCTGTAGATACATTTGGTGATGTGGACGCTCTGATTAACAATGCT    264

BSNT_02354___    265 GCCGGAAACTTTATTTG--TCCGGCAGAAAAGCTGACGCCCAATGGATGG    312
                     ||.||||||||  ||||  |||.||||||||.||..|.||.||.||.|||
BPUM_1303___y    265 GCAGGAAACTT--TTTGGTTCCAGCAGAAAAACTATCTCCAAACGGCTGG    312

BSNT_02354___    313 AAAGCCGTTATTGAGATTGTTTTAAACGGCACATTTTTTTGCAGCCAAGC    362
                     ||.||.||.|||||.|||||.|||||.||.||||||||||||||.||.||
BPUM_1303___y    313 AAGGCTGTCATTGATATTGTATTAAATGGAACATTTTTTTGCAGTCATGC    362

BSNT_02354___    363 AG-CGGCAAGGCATTGGATTGACCAGAAGCAGCAGGG--TGTCATTTTAA    409
                     || .||||| ..|.||||||...||.||| |..||||  .|| ||..|.|
BPUM_1303___y    363 AGTGGGCAA-TTACTGGATTCGTCAAAAG-AAAAGGGGAAGT-ATGGTCA    409

BSNT_02354___    410 ATATGGCAGCCACGTACGCTTGGGGAGCGGGAGCGGGGGTCGTTCATTCC    459
                     ||||||..||.||.||.||.|||||.||.||.|..||.||.|..|||||.
BPUM_1303___y    410 ATATGGTGGCAACCTATGCATGGGGTGCTGGTGTAGGTGTGGCGCATTCA    459

BSNT_02354___    460 GCTGCAGCCAAAGCGGGGGTATTGTCATTGACAAGAACGCTGGCCGTTGA    509
                     ||.|||||.||.||.||.||.||.||..|.||..|||||||.||.||.||
BPUM_1303___y    460 GCAGCAGCAAAGGCAGGCGTTTTATCCCTCACTCGAACGCTTGCAGTGGA    509

BSNT_02354___    510 ATGGGG-GAGCAAATACGGCATTCGTACAAACGCGATAGCCCCCGGACCG    558
                     .||||| .||| ||||..|.|||||....||.||.||.||.||.||.||.
BPUM_1303___y    510 GTGGGGAAAGC-AATATCGAATTCGCGTCAATGCCATCGCGCCAGGTCCA    558

BSNT_02354___    559 ATTGAACGAACAGGCGGTGCGGAGAAGCTATTTGAATCGGAAAAAGCGAT    608
                     |||||..||||||||||||||||.||.||||..|||||||||.|      
BPUM_1303___y    559 ATTGAGAGAACAGGCGGTGCGGATAAACTATGGGAATCGGAAGA------    602

BSNT_02354___    609 GGC-CCGCACGATGAAC-------AGTGTGCCGCTCGGCCGATTGGGCAC    650
                     ||| .||||  |.||||       |||||.||.||.|||.||.|||||||
BPUM_1303___y    603 GGCAGCGCA--AAGAACATTAGATAGTGTTCCTCTTGGCAGACTGGGCAC    650

BSNT_02354___    651 ACCGGAGGAAATCGCCGCTTTGGC-AGCGTTTTTGCTTTCTGATGAAGCA    699
                     |||.|||||||||||.|...|.|| ||| |||||..|.|||||..||||.
BPUM_1303___y    651 ACCAGAGGAAATCGCAGAACTCGCAAGC-TTTTTATTATCTGAACAAGCG    699

BSNT_02354___    700 TCCTATATAAACGGGGATTGTATCACAATGGACGGGGGGCAATGGCT---    746
                     ||.||||||||.||.|||||||||||||||||.||.|||||||||||   
BPUM_1303___y    700 TCTTATATAAATGGCGATTGTATCACAATGGATGGAGGGCAATGGCTCAA    749

BSNT_02354___    747 -GAATCCTTATCCGTTTTAA    765
                      .|||||    ||.||||.|
BPUM_1303___y    750 CCAATCC----CCATTTTGA    765


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02354 and BPUM_1303

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
