Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02367 and BPUM_1316

See Amino acid alignment / Visit BSNT_02367 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:51
# Commandline: needle
#    -asequence dna-align/BSNT_02367___ykuR.1.24716.seq
#    -bsequence dna-align/BPUM_1316___ykuR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02367___ykuR-BPUM_1316___ykuR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02367___ykuR-BPUM_1316___ykuR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02367___ykuR
# 2: BPUM_1316___ykuR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1176
# Identity:     804/1176 (68.4%)
# Similarity:   804/1176 (68.4%)
# Gaps:          96/1176 ( 8.2%)
# Score: 2659.5
# 
#
#=======================================

BSNT_02367___      1 ---ATGAAGAAA----GAGGAGCTCATCGCAATTCGCAGAGATCTGCATC     43
                        .|    |||    |||.|..|.||..|.|||||.||||||.|.||||
BPUM_1316___y      1 TTGTT----AAATCGTGAGCAATTGATATCCATTCGAAGAGATTTACATC     46

BSNT_02367___     44 GTATACCGGAGCTTGGATTTCAGGAGTTCAAAAC-CCAGCAGTAT-TTAT     91
                     ..||.||.||||||||.|||.|.||.|||||||| |.||| |||| |.||
BPUM_1316___y     47 AAATCCCTGAGCTTGGTTTTAAAGAATTCAAAACACAAGC-GTATCTCAT     95

BSNT_02367___     92 TA--CATGTCTTGGAACAA----TATCCGCAAGACAGAATTGAAATTGAG    135
                     .|  ||  |||||     |    |||.|..||||..|.||||||||.||.
BPUM_1316___y     96 CAATCA--TCTTG-----ATGCTTATTCAAAAGATCGCATTGAAATGGAA    138

BSNT_02367___    136 AAATGGCGAACAGGGCTTTTTGTAAAAGTGAACGGGACGGCGCCGGAAAA    185
                     |.|||||||||.||.||||||||.|||||.||           .||||.|
BPUM_1316___y    139 ACATGGCGAACTGGACTTTTTGTCAAAGTAAA-----------GGGAACA    177

BSNT_02367___    186 AATGCTG-----------GCATACAGAGCGGATATCGATGCGCTTTCTAT    224
                     |||.|||           ||.||..||||.|||||.||.|..||.|||||
BPUM_1316___y    178 AATCCTGAGCGAGTATTTGCGTATCGAGCAGATATGGACGGTCTGTCTAT    227

BSNT_02367___    225 AGAAGAGCAAACTGGTCTTCCATTCGCATCAGAGCATCACGGCAACATGC    274
                     ....|||.|.||.||...||||||...|||||..|||.|.||.||.||||
BPUM_1316___y    228 TCCCGAGGATACAGGGTATCCATTTCAATCAGTACATGAAGGGAAGATGC    277

BSNT_02367___    275 ACGCCTGCGGTCACGATTTGCATATGACAATTGCACTCGGCATTATTGAT    324
                     |.||.||.||.||.||..|.||||||||.||||||||.||..|.||||||
BPUM_1316___y    278 ATGCGTGTGGACATGACCTTCATATGACCATTGCACTTGGTGTCATTGAT    327

BSNT_02367___    325 CATTTTGTTCACCACCCAGTCAAACATGATTTGCTTTTTCTGTTTCAGCC    374
                     |||||.|||||..|.|||.|.|||.|.|||.|..|.|||.||||.|||||
BPUM_1316___y    328 CATTTCGTTCATGAGCCAATTAAAGAAGATCTATTATTTATGTTCCAGCC    377

BSNT_02367___    375 GGCAGAGGAAGGGCCTGGCGGTGCGGAACCAATGCTTGA-GAGCGATGTA    423
                     ||||||.|||||.||.|||||.||.|||||.|||| ||| .||.|||||.
BPUM_1316___y    378 GGCAGAAGAAGGTCCGGGCGGAGCTGAACCGATGC-TGACAAGTGATGTG    426

BSNT_02367___    424 TTAAAAAAATGGCAGCCTGATTTCATCACTGCCCTTCATATTGCTCCAGA    473
                     .|.|||||||||..|||.|||||.||.||.||.||.||||||||.||.||
BPUM_1316___y    427 CTGAAAAAATGGACGCCGGATTTTATTACAGCACTGCATATTGCACCTGA    476

BSNT_02367___    474 GCTTCCGGTAGGCACCATTGCGACAAAAAGC--GGCCTTCTATTTGCGAA    521
                     ...|||.||.||.||.||.||  ||.|||||  ||.||.||.|||||.||
BPUM_1316___y    477 ATATCCTGTCGGAACGATAGC--CACAAAGCCAGGGCTGCTTTTTGCCAA    524

BSNT_02367___    522 TACATCAGAGCTAGTCATCGATCTGGAAGGCAAAGGGGGACATGCGGCAT    571
                     |||....|||||.||.||.|||||.|||||.|||||.|||||.||.||.|
BPUM_1316___y    525 TACGAGTGAGCTTGTGATTGATCTTGAAGGAAAAGGTGGACACGCTGCTT    574

BSNT_02367___    572 ATCCGCATTTGGCTGAGGATATGGTTGTAGCAGCAAGTACACTTGTCACC    621
                     |.||.|||||.||..|.|||||||||||.||.||.|||.|||||||....
BPUM_1316___y    575 ACCCTCATTTAGCGAATGATATGGTTGTGGCTGCGAGTGCACTTGTAGGT    624

BSNT_02367___    622 CAGCTGCAAACGATTATCTCTAGAAACACAGATCCGCTAGACAGTGCTGT    671
                     ||.||||||.||.||||.|||.|.||....|||||.||.||.|||||.||
BPUM_1316___y    625 CAACTGCAATCGGTTATTTCTCGTAATGTGGATCCTCTTGATAGTGCCGT    674

BSNT_02367___    672 TATTACAGTTGGTACCATTACCGGAGGCTCGGCACAAAATATCATTGCGG    721
                     .|||||..||||.||.||||||||.||..||||.|||||||||||||||.
BPUM_1316___y    675 CATTACGATTGGCACGATTACCGGGGGAACGGCTCAAAATATCATTGCGC    724

BSNT_02367___    722 AAACGGCCCACCTGGAAGGCACGATCCGCACGCTTTCTGAAGAATCGATG    771
                     |....||..|.||.||.|||||.||.||.||.|||||...||||||.|||
BPUM_1316___y    725 AGCATGCAAAGCTTGATGGCACCATTCGTACACTTTCACCAGAATCTATG    774

BSNT_02367___    772 AAACAAGT---AAAGGAACGGATTGAAGATGTAGTGAAAGGAATCGAAAT    818
                     .||.||||   ||||   ||.|||||||...|||..|||||.||.|||||
BPUM_1316___y    775 GAAAAAGTGAGAAAG---CGAATTGAAGCACTAGCAAAAGGGATTGAAAT    821

BSNT_02367___    819 CGGATTCCGCTGCAAAGGAAAAGTGACATATCCGTCTGTC-TATCACCAA    867
                     .||.|.|...||.||.|.||..|||..|||.||.|| .|| |||.||.||
BPUM_1316___y    822 TGGCTACGAATGTAAGGCAACCGTGCGATACCCTTC-ATCTTATTACGAA    870

BSNT_02367___    868 GTTTACAATACGAGCGGATTAACAGAAGAATTTATGTCTTTTGTTGCTGA    917
                     ||..|.|||.|.|..|.|.|.|||||||||||||||||.|.|||||||||
BPUM_1316___y    871 GTGGATAATTCCAAGGAACTGACAGAAGAATTTATGTCATATGTTGCTGA    920

BSNT_02367___    918 ACATCAACTGGCGACTGTAATTGAA-GCAAAAGAAGCAATGACTGGGGAG    966
                     |.|...|||.||||.|||..||||| || |.|||.||.|||||.||.||.
BPUM_1316___y    921 AGAAGGACTTGCGAATGTGGTTGAATGC-AGAGAGGCCATGACAGGAGAA    969

BSNT_02367___    967 GATTTTGGCTATATGCTGAAAAAATATCCCGGCTTCATGTTCTGGCTCGG   1016
                     ||||||||.||.||||||||||||||.||.||.||||||||.|||.|.||
BPUM_1316___y    970 GATTTTGGTTACATGCTGAAAAAATACCCTGGATTCATGTTTTGGTTAGG   1019

BSNT_02367___   1017 CGCTGATTCTGAACATGGGCTTCATCATGCTAAGCTGAATCCCGATGAAA   1066
                     .|..|||||.|||.||||.||.||||||||.||.||.|..||.|||||||
BPUM_1316___y   1020 GGTCGATTCAGAATATGGTCTGCATCATGCAAAACTTATGCCTGATGAAA   1069

BSNT_02367___   1067 ATGCGATAGAAACAGCGGTTAATGTCATGACAGGTTATTTTTCTGTTTAT   1116
                     |.||||||||||||||.||.|||||.|||||.|.||||||          
BPUM_1316___y   1070 AAGCGATAGAAACAGCAGTAAATGTTATGACGGCTTATTT----------   1109

BSNT_02367___   1117 GCCAATTAA-----------------   1125
                       |||  ||                 
BPUM_1316___y   1110 --CAA--AAAGCAAGCAGGTGAATGA   1131


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