Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02370 and BPUM_1318

See Amino acid alignment / Visit BSNT_02370 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:51
# Commandline: needle
#    -asequence dna-align/BSNT_02370___ykuT.1.24716.seq
#    -bsequence dna-align/BPUM_1318___ykuT.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02370___ykuT-BPUM_1318___ykuT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02370___ykuT-BPUM_1318___ykuT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02370___ykuT
# 2: BPUM_1318___ykuT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 907
# Identity:     540/907 (59.5%)
# Similarity:   540/907 (59.5%)
# Gaps:         200/907 (22.1%)
# Score: 1523.0
# 
#
#=======================================

BSNT_02370___      1 ATGGA--CTTTATTAAACAA-TATGATTGGGCGGGACTGATTACAAATGC     47
                     |||.|  |.|  ||.|.||| || |||||         ||||.|.|    
BPUM_1318___y      1 ATGAAAGCAT--TTGAGCAAGTA-GATTG---------GATTTCCA----     34

BSNT_02370___     48 CGGTGTTCTGCTCATTAAACTCGCCATTATGATATTGCT-----------     86
                          ||.|.||||.||      .||.||||||.|||||           
BPUM_1318___y     35 -----TTATCCTCAATA------GCAGTATGATTTTGCTAAAACTAATCG     73

BSNT_02370___     87 CTATTTTATCG-------TTCGATCAT--TAGGCAT--GAAA----ATCA    121
                     |||||||..||       ||  |||||  .||.|||  ||||    ||.|
BPUM_1318___y     74 CTATTTTCGCGATTTACTTT--ATCATCAAAGCCATCGGAAATAAGATGA    121

BSNT_02370___    122 TTAAACAT--CTGTTTGCAAAATTC---GAGGAGCA-GAATAGCTTGTC-    164
                     ||||.|.|  ||..|  |.|.||||   ||..|||| ||      |||| 
BPUM_1318___y    122 TTAAGCGTGCCTACT--CCACATTCTCTGAAAAGCATGA------TGTCT    163

BSNT_02370___    165 ---TATCGGACGTGCACATACGCTCCGAAGCCTGACTCTTAACATATTTG    211
                        ||||  |.|.||.||.|||||.|.|||.||.||..|.||.||.||.|
BPUM_1318___y    164 CTTTATC--AAGGGCTCAGACGCTGCAAAGTCTTACGTTGAATATTTTCG    211

BSNT_02370___    212 CTTATACTTTGATTTTTATATTCT--TCGTCATGGTTCTAGATTTGTTTC    259
                     |.||.|..||||||||  ||||||  ||||||||.|.||.||.|||||||
BPUM_1318___y    212 CCTACATATTGATTTT--TATTCTAGTCGTCATGATCCTCGACTTGTTTC    259

BSNT_02370___    260 ATTATGATCCAAGCGCTCTTTTAGCGGGGGCAGGAATCGTCGGCCTGGCT    309
                     |||||.|.||.|..|||.|..||||.||.|||||..|.||.||.||.||.
BPUM_1318___y    260 ATTATAACCCGACAGCTTTACTAGCTGGTGCAGGGGTTGTGGGGCTTGCG    309

BSNT_02370___    310 GTCGGATTTGGCGCCCAAGGGCTTGTCAGTGACATCGTGACAGGTTTTTT    359
                     .||||.||||||||.|||||.||.||.|||||.||.||||||||.|||||
BPUM_1318___y    310 ATCGGCTTTGGCGCTCAAGGTCTAGTGAGTGATATTGTGACAGGATTTTT    359

BSNT_02370___    360 TATTTTGCTTGAGAAACAATTGGATGTCGGAGATTATATTACCGTTTCCA    409
                     |||..||.|.|||||||||||.|||||.|||||.|||||.||.|||.|..
BPUM_1318___y    360 TATCCTGTTAGAGAAACAATTCGATGTGGGAGAATATATAACAGTTGCTG    409

BSNT_02370___    410 CCTTTGACGGAATTGTCGAGCAGGTTGG-CTTAAGAACAACTCAAATCCG    458
                     ..|||||.||.||.||.||.||..|||| ||| |||||.||.||..|..|
BPUM_1318___y    410 GATTTGATGGGATCGTAGAACAAATTGGACTT-AGAACCACGCAGCTTAG    458

BSNT_02370___    459 CAGCTTTGACGGAACATTGCATTACATCCCCAACAGAAACATCACAAACG    508
                     .|||||||||||.||..|.||||..||.||.||..|||.|||....||||
BPUM_1318___y    459 AAGCTTTGACGGCACCCTTCATTTTATTCCAAATCGAAGCATATTGAACG    508

BSNT_02370___    509 TAAGCAATCATTCTCGTGGTACCATGCAGGCTCTTGTTGATATTAAAGTG    558
                     |.|||||.|||||..|.||.||.||||||||.||.||||||||       
BPUM_1318___y    509 TGAGCAACCATTCAAGAGGCACTATGCAGGCACTGGTTGATAT-------    551

BSNT_02370___    559 CCG-GCTGA-------AAGA-AACATTGATGAAATGA---------TTCA    590
                      || ||| |       |||| ||..|.|||.||||||         ||||
BPUM_1318___y    552 -CGAGCT-ATCTCCAGAAGAGAATGTGGATCAAATGATCACTGCCCTTCA    599

BSNT_02370___    591 TATTTTACAGCAGGTTTGTGATGA-------GACGGCAGCGGCTCTTCCA    633
                             ||| ||..||||||||       ||.|.||       ||||.
BPUM_1318___y    600 --------AGC-GGCGTGTGATGAAGTGCGGGAAGACA-------TTCCT    633

BSNT_02370___    634 CAAATAAAAGAAGGCCCAAATGTCATCGG-------------GATTCAAG    670
                     |||||.|..|||||.||..|.||..||||             |.|||   
BPUM_1318___y    634 CAAATTATCGAAGGGCCTCAAGTTGTCGGCGTGGAGGCGTTCGGTTC---    680

BSNT_02370___    671 AACTGGGGACTT--CTGAAATTGTGATCAGGGTCATTGCCAAAACAGAAA    718
                       ||     |||  ||...|.||.|  ||   |||||||.|||||.||||
BPUM_1318___y    681 --CT-----CTTCCCTCGTACTGCG--CA---TCATTGCAAAAACCGAAA    718

BSNT_02370___    719 ATATGGAACAGTGGCGAGTCGAACGAGTGTTGAGAAAAGAAAT-AAAGAA    767
                     ..|||||.||.||||||||.||||||.|..||.|.|||.|||| ||||||
BPUM_1318___y    719 CAATGGAGCAATGGCGAGTAGAACGAATCCTGCGCAAAAAAATGAAAGAA    768

BSNT_02370___    768 CGCGT--TCGACCGCGCTTTCCCTAAAGAAACAGAATAA-----------    804
                        ||  |.||            ||.|||||.|||..||           
BPUM_1318___y    769 ---GTACTTGA------------TATAGAAAAAGAGCAAAAAGAACCGGG    803

BSNT_02370___    804 -------    804
                            
BPUM_1318___y    804 ACAATAA    810


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