Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02376 and BPUM_1321
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:51
# Commandline: needle
# -asequence dna-align/BSNT_02376___rok.1.24716.seq
# -bsequence dna-align/BPUM_1321___rok.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02376___rok-BPUM_1321___rok.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02376___rok-BPUM_1321___rok.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02376___rok
# 2: BPUM_1321___rok
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 603
# Identity: 443/603 (73.5%)
# Similarity: 443/603 (73.5%)
# Gaps: 48/603 ( 8.0%)
# Score: 1648.0
#
#
#=======================================
BSNT_02376___ 1 ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGA 50
.||||||||||.||.|||||.||.||.||.||.||.|||||||||||.||
BPUM_1321___r 1 TTGTTTAATGAGAGGGAAGCGTTACGATTACGATTGGAACAATTAAACGA 50
BSNT_02376___ 51 AGCTGAAGTGAAAGTCATTCGTGAATATCAAATTGAACGTGATAAAATAT 100
.||.|||||.||.|||||.|||||||||||||||||.||.|||...||.|
BPUM_1321___r 51 GGCAGAAGTAAAGGTCATCCGTGAATATCAAATTGAGCGAGATGCGATTT 100
BSNT_02376___ 101 ACGCAAAATTAAGAGAGCTGGACAGAAATGGA--AGCCCT----TCCGAA 144
|.||||||||||||||..|.|||.|..|.||| ||..|| ||.||.
BPUM_1321___r 101 ATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGAT 150
BSNT_02376___ 145 ATCAAAAAGGATTTCCGTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCT 194
|..|||||.||..|.|||.|.||||.||||.|.||.||.|||||.||..|
BPUM_1321___r 151 ACAAAAAAAGAAGTGCGTACAGAAAGAAAAACGGATTCACTGCCTGTATT 200
BSNT_02376___ 195 CGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCG------CAAT 238
.||||||||.||.||.||||||||.|||||.||.|||||| ||||
BPUM_1321___r 201 AGCTGAGCTGGCTGCACAGGAAATGAGAAGTTACCAGCCGCCTGCACAAT 250
BSNT_02376___ 239 CACAGCAGCAGTCT-GTTCAGCCTCAGCTTCA----------ATCTA--- 274
|| ||.||| .|||.||.|||.|||.| |.|||
BPUM_1321___r 251 CA------CAATCTAATTCTGCATCATCTTTAGGAACAGGGCAGCTAAAC 294
BSNT_02376___ 275 -TTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAGAAG 323
.|.| .||||..|||||.||.||.|||.|.|||.||.|.|||||
BPUM_1321___r 295 GGTGC------ACCTGTAGGTATTCCTGAAGGATCTACAAGACGTAGAAG 338
BSNT_02376___ 324 AGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTA 373
|||.||.||..|.||.||.|||||.||||||||.||.|||||||||||.|
BPUM_1321___r 339 AGGCACAGCCCGCCCTGGTTCAAAGGCAGCTAAACTTCGTGAAGCTGCAA 388
BSNT_02376___ 374 TTAAAACATTAAAACGCCACAACGCGGCGATTAAGAGCTCGGAGCTTCAA 423
|||||||.|||||.||.||.||.|||||||||||.|||||.||.||||||
BPUM_1321___r 389 TTAAAACGTTAAAGCGTCATAATGCGGCGATTAAAAGCTCTGAACTTCAA 438
BSNT_02376___ 424 AAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATT 473
|||||.|||||||||||.||||||||||||||.||.|||||||||||.||
BPUM_1321___r 439 AAAGAAATTGAAAAAGAGAGCGGTCTTGAAATTCCAAATATGACAACGTT 488
BSNT_02376___ 474 TATGCAAAGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCG 523
||||||||||||||||||||||||.||.||||||||||||||||||||||
BPUM_1321___r 489 TATGCAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAGCCATATCGCG 538
BSNT_02376___ 524 GGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGAATCAGCAAATGAA 573
|.|||||.|||.||||.||.||.|| || ||.|||.|.|.|||
BPUM_1321___r 539 GACAGTATATTCTAGAAGGCGATAT----TC-----AAACAGAAGACGAA 579
BSNT_02376___ 574 TAA 576
|||
BPUM_1321___r 580 TAA 582
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